Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008801.1-P | Field mustard | plastid | 98.07 | 95.13 |
| CDY70634 | Canola | plastid | 97.3 | 94.38 |
| CDX78539 | Canola | cytosol, plastid | 82.63 | 81.68 |
| CDX70521 | Canola | plastid | 83.01 | 80.22 |
| AT5G13810.1 | Thale cress | plastid | 83.01 | 78.47 |
| VIT_13s0019g00340.t01 | Wine grape | plastid | 59.85 | 57.84 |
| Solyc11g005270.1.1 | Tomato | cytosol | 41.31 | 56.32 |
| KRH62918 | Soybean | cytosol, plastid | 52.51 | 52.92 |
| KRH13399 | Soybean | plastid | 53.67 | 52.06 |
| KRH20755 | Soybean | plastid | 54.05 | 51.66 |
| Solyc03g078380.1.1 | Tomato | cytosol | 51.74 | 51.34 |
| PGSC0003DMT400047487 | Potato | cytosol | 51.74 | 50.76 |
| PGSC0003DMT400015465 | Potato | cytosol | 50.19 | 47.45 |
| CDX80893 | Canola | cytosol | 16.22 | 38.53 |
| CDY11274 | Canola | cytosol | 16.22 | 38.53 |
| CDX74801 | Canola | cytosol | 24.32 | 37.72 |
| CDY00113 | Canola | cytosol | 19.3 | 37.59 |
| CDY59509 | Canola | cytosol, plastid | 35.14 | 36.11 |
| CDY32696 | Canola | cytosol, plastid | 34.75 | 35.86 |
| CDY32794 | Canola | peroxisome | 34.75 | 34.75 |
| CDX98926 | Canola | cytosol | 27.41 | 29.58 |
| CDY67834 | Canola | cytosol | 27.41 | 29.34 |
| CDX74802 | Canola | cytosol, mitochondrion | 27.8 | 29.15 |
| CDY14762 | Canola | cytosol, plastid | 40.54 | 29.01 |
| CDY14169 | Canola | cytosol | 27.41 | 28.98 |
| CDY18861 | Canola | mitochondrion | 27.41 | 28.86 |
| CDY01245 | Canola | cytosol | 28.19 | 28.19 |
| CDY06932 | Canola | plastid | 39.77 | 27.99 |
| CDX93821 | Canola | cytosol | 27.8 | 27.69 |
| CDX76039 | Canola | plastid | 37.07 | 27.35 |
| CDY06138 | Canola | plastid | 41.31 | 27.09 |
| CDX72074 | Canola | plastid | 40.93 | 26.63 |
| CDX81007 | Canola | cytosol, mitochondrion | 22.78 | 26.58 |
| CDY30970 | Canola | plastid | 37.45 | 26.36 |
| CDX90765 | Canola | cytosol | 27.03 | 26.22 |
| CDY55763 | Canola | cytosol, mitochondrion | 22.39 | 26.13 |
| CDY05109 | Canola | cytosol | 26.64 | 26.04 |
| CDY22520 | Canola | plastid | 40.15 | 25.94 |
| CDY35418 | Canola | plastid | 39.38 | 25.44 |
| CDY04039 | Canola | cytosol | 29.73 | 22.85 |
| CDY04902 | Canola | nucleus | 30.5 | 22.77 |
| CDY70277 | Canola | cytosol | 29.34 | 22.55 |
| CDY30281 | Canola | cytosol | 32.82 | 22.02 |
| CDY67051 | Canola | cytosol | 31.66 | 21.64 |
| CDY47842 | Canola | cytosol | 28.96 | 20.83 |
| CDY20015 | Canola | cytosol | 32.43 | 20.79 |
| CDY62024 | Canola | cytosol | 28.19 | 20.28 |
| CDX86410 | Canola | cytosol | 32.05 | 20.19 |
| CDY04838 | Canola | mitochondrion | 27.8 | 20.11 |
| CDX85224 | Canola | cytosol | 32.05 | 20.05 |
| CDX80894 | Canola | nucleus | 3.47 | 4.59 |
| CDY11275 | Canola | nucleus | 3.47 | 4.55 |
Protein Annotations
| Gene3D:3.40.30.10 | MapMan:35.1 | GO:A0A078JQQ5 | UniProt:A0A078JQQ5 | EnsemblPlants:CDY67732 | ProteinID:CDY67732 |
| ProteinID:CDY67732.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0006091 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 |
| GO:GO:0022900 | GO:GO:0045454 | GO:GO:0055114 | EnsemblPlantsGene:GSBRNA2T00066099001 | InterPro:Glutaredoxin | InterPro:IPR002109 |
| PFAM:PF00462 | PFscan:PS51354 | PANTHER:PTHR10168 | PANTHER:PTHR10168:SF84 | SUPFAM:SSF52833 | InterPro:Thioredoxin-like_sf |
| UniParc:UPI0004EEBD2E | : | : | : | : | : |
Description
BnaCnng56140DBnaCnng56140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQQ5]
Coordinates
chrLK036452:+:3324..4911
Molecular Weight (calculated)
29154.9 Da
IEP (calculated)
9.477
GRAVY (calculated)
-0.495
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MADKTKSSSS FFNRSLTIHS HRTTDSTAKS HSLNPSLNRT TSITKFYNPV ETSLKGKVKN LCRLFEGSKS SAKPTDPPQK HKSNKSVLSE SRLSPFLSLN
101: NSVIRLPGTE DRIVVYFTSL RGIRRTYEDC YSVRMIFRGF RVWIDERDVS MDSAYKKELQ IAMGEKSSVS LPQVFIMGKH VGGADVVKSL FEIGELAKIL
201: KLFPVREPGF VCRCCGDARF IPCSNCSGSK KLYDEDEDRH KRCPECNENG LIRCPDCSS
101: NSVIRLPGTE DRIVVYFTSL RGIRRTYEDC YSVRMIFRGF RVWIDERDVS MDSAYKKELQ IAMGEKSSVS LPQVFIMGKH VGGADVVKSL FEIGELAKIL
201: KLFPVREPGF VCRCCGDARF IPCSNCSGSK KLYDEDEDRH KRCPECNENG LIRCPDCSS
001: MAGLEKNADF SGKTTKSATT TSFFNRSLTI HGRTVVDSGP KSHNLNPSLN RTTSITKFYT PVESMGTSLK GKVKNLCRLF ETSKPVKPAL AEIPQKQKSG
101: KSLLPESRIS PFSSLNNSVI RLPGTEDRIV VYFTSLRGIR RTYEDCYAVR MIFRGFRVWI DERDVSMDIA YRKELQIAMG EKSVSLPQVF IMGKYVGGAD
201: VIKSLFEIGE LAKILKEFPM RQPGFVCHCC GDIRFVPCSN CSGSKKLFDE DEDRVKRCPE CNENGLIRCP DCSS
101: KSLLPESRIS PFSSLNNSVI RLPGTEDRIV VYFTSLRGIR RTYEDCYAVR MIFRGFRVWI DERDVSMDIA YRKELQIAMG EKSVSLPQVF IMGKYVGGAD
201: VIKSLFEIGE LAKILKEFPM RQPGFVCHCC GDIRFVPCSN CSGSKKLFDE DEDRVKRCPE CNENGLIRCP DCSS
Arabidopsis Description
AT5g13810/MAC12_24 [Source:UniProtKB/TrEMBL;Acc:Q9FFZ0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.