CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G043720.1	Barley	cytosol	22.16	74.0
HORVU4Hr1G013230.1	Barley	cytosol	28.74	68.57
CDY36464	Canola	mitochondrion	97.01	63.53
CDY13395	Canola	mitochondrion	96.41	61.69
CDX68704	Canola	mitochondrion	95.21	61.63
CDY28228	Canola	mitochondrion	95.21	61.39
AT4G30930.1	Thale cress	mitochondrion	93.41	57.78
VIT_00s0265g00080.t01	Wine grape	cytosol, nucleus, plastid	29.34	55.06
VIT_14s0060g00010.t01	Wine grape	mitochondrion	24.55	46.07
Solyc02g078200.2.1	Tomato	nucleus	71.86	45.45
PGSC0003DMT400076437	Potato	plastid	73.05	45.35
EES19931	Sorghum	mitochondrion	67.66	45.2
KRH50046	Soybean	mitochondrion	70.66	45.04
Os05t0557800-02	Rice	mitochondrion	67.07	44.8
Zm00001d038973_P001	Maize	mitochondrion	67.07	44.8
KRH20452	Soybean	mitochondrion	71.26	44.57
TraesCS1D01G396400.1	Wheat	mitochondrion	67.66	44.14
TraesCS1A01G388500.1	Wheat	mitochondrion	67.66	43.97
TraesCS1B01G415900.1	Wheat	mitochondrion	66.47	43.02
GSMUA_Achr9P06220_001	Banana	mitochondrion	65.27	41.13
HORVU1Hr1G085550.1	Barley	plastid	66.47	34.69
CDX91752	Canola	plastid	33.53	27.59
CDY41872	Canola	plastid	33.53	27.59

Protein Annotations

MapMan:17.7.1.1.19	GO:A0A078GF63	UniProt:A0A078GF63	EnsemblPlants:CDY23263	ProteinID:CDY23263	ProteinID:CDY23263.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00021826001
InterPro:L21-like_sf	InterPro:L21p-like	HAMAP:MF_01363	PFAM:PF00829	ScanProsite:PS01169	PANTHER:PTHR21349
PANTHER:PTHR21349:SF0	InterPro:Ribosomal_L21	InterPro:Ribosomal_L21_CS	SUPFAM:SSF141091	TIGRFAMs:TIGR00061	UniParc:UPI0004EDDCCD
SEG:seg	:	:	:	:	:

Description

BnaA08g12830DBnaA08g12830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GF63]

Coordinates

chrLK032142:-:122390..123649

Molecular Weight (calculated)

18840.0 Da

IEP (calculated)

9.805

GRAVY (calculated)

-0.326

Length

167 amino acids

Sequence
(BLAST)

001: MEAEREYSPA EKVEAAAEIG YKVMGPLKPS ERLFKLYEPV FAVVQIGSHQ FKVSNGDSIF TEKLKFCDIN DKLVLIKVLL LGSASQTIIG RPILPDATVH
101: AVVEEHALDE KVLIFKKKRR KNYRRTTGHR QELTKLRITD IQGIEKPEPK IVHKPSKAAH TEAELVA

Best Arabidopsis Sequence Match ( AT1G35680.1 )
(BLAST)

001: MASSSATLSL CSTFSAHCNV NSRRSSTILC SLSKPSLNLA KPLTGFLSPS TASTSRTAFT VAPKFAESVV EAEPETTDIE AVVVSDVSEV TEEKAKREEI
101: FAVIMVGGRQ YIVFPGRYLY TQRLKDANVD DQIVLNKVLL VGTKTHTYIG KPVVTNATVH AVVESQGLND KVVVFKYKPK KKYRRNIGHR QPNTRIRITG
201: ITGYEEYPAS PNVAVGEVNL

Arabidopsis Description

RPL2150S ribosomal protein L21, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P51412]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.