Factsheet for TraesCS1A01G388500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G415900.1	Wheat	mitochondrion	96.5	96.12
TraesCS1D01G396400.1	Wheat	mitochondrion	95.72	96.09
HORVU4Hr1G013230.1	Barley	cytosol	24.9	91.43
HORVU6Hr1G043720.1	Barley	cytosol	16.34	84.0
HORVU1Hr1G085550.1	Barley	plastid	94.94	76.25
Zm00001d038973_P001	Maize	mitochondrion	71.21	73.2
EES19931	Sorghum	mitochondrion	70.04	72.0
Os05t0557800-02	Rice	mitochondrion	69.65	71.6
CDY23263	Canola	cytosol	43.97	67.66
VIT_00s0265g00080.t01	Wine grape	cytosol, nucleus, plastid	19.46	56.18
KRH50046	Soybean	mitochondrion	54.47	53.44
KRH20452	Soybean	mitochondrion	54.86	52.81
Solyc02g078200.2.1	Tomato	nucleus	52.92	51.52
PGSC0003DMT400076437	Potato	plastid	53.31	50.93
CDY36464	Canola	mitochondrion	50.19	50.59
Bra010267.1-P	Field mustard	mitochondrion	50.19	50.0
CDY28228	Canola	mitochondrion	50.19	49.81
Bra011233.1-P	Field mustard	mitochondrion	49.81	49.61
Bra024036.1-P	Field mustard	mitochondrion	51.36	49.44
VIT_14s0060g00010.t01	Wine grape	mitochondrion	17.12	49.44
GSMUA_Achr9P06220_001	Banana	mitochondrion	50.97	49.43
CDY13395	Canola	mitochondrion	50.19	49.43
CDX68704	Canola	mitochondrion	49.03	48.84
AT4G30930.1	Thale cress	mitochondrion	50.19	47.78
TraesCS6A01G191400.2	Wheat	mitochondrion	24.9	31.68

Protein Annotations

MapMan:17.7.1.1.19	GO:GO:0000003	GO:GO:0000741	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005840	GO:GO:0006412	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009553	GO:GO:0009555	GO:GO:0009567
GO:GO:0009987	GO:GO:0010197	GO:GO:0016043	GO:GO:0019538	GO:GO:0030154	GO:GO:0043565
InterPro:L21-like_sf	InterPro:L21p-like	HAMAP:MF_01363	PFAM:PF00829	ScanProsite:PS01169	PANTHER:PTHR21349
InterPro:Ribosomal_L21	InterPro:Ribosomal_L21_CS	SUPFAM:SSF141091	TIGRFAMs:TIGR00061	EnsemblPlantsGene:TraesCS1A01G388500	EnsemblPlants:TraesCS1A01G388500.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:556957789..556962784

Molecular Weight (calculated)

28312.5 Da

IEP (calculated)

6.637

GRAVY (calculated)

-0.568

Length

257 amino acids

Sequence
(BLAST)

001: MATRRCLLRL LTRGLAPHAP QPLAPASIAA RTLTSLPRPL APRAAAASLR LSPPRCHFAT RSSDDEGDDE EHYEDEEDGS GDEWGEGDEE TPAAKPPSGK
101: TEEEKLAEAN EIGYKVVGPL GADEKPFKPY EPVFAVVQIG SHQFKVSNGD SIFTERLKFC DVNDKLVLNR VLMLGSQAQT IIGRPILTDA TVHAVVEEHA
201: LDAKVIIFKK KRRKNYRRTR GHRQELTKLR ITNIEGIDKS FIQQEGTDKP ESAAVAA

Best Arabidopsis Sequence Match ( AT4G30930.1 )
(BLAST)

001: MASLRCFREL SRRATTVFSI NQTRSISSFH GIEFSGTSIS HGTVIPNRSL TRNLPWYSHW YRSQDRCFSS NTKDTDEDEE SSEGEDDDEE EGEDFEDSAD
101: MEVEREYSPA EKVEEAEEIG YKVMGPLKPS ERLFKPYEPV FAIVQIGSHQ FKVSNGDSIF TEKLKFCDIN DKLELTKVLL LGSASQTIIG RPILPDATVH
201: AVVEEHALDE KVLIFKKKRR KNYRRTRGHR QELTKLRITD IQGIEKPEPK IVHKPSKEAV TEQTKAELVA

Arabidopsis Description

RPL21MNFD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UZG0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.