Factsheet for Bra024036.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13395	Canola	mitochondrion	88.76	90.8
Bra010267.1-P	Field mustard	mitochondrion	77.53	80.23
AT4G30930.1	Thale cress	mitochondrion	80.15	79.26
Bra011233.1-P	Field mustard	mitochondrion	76.4	79.07
HORVU6Hr1G043720.1	Barley	cytosol	14.23	76.0
HORVU4Hr1G013230.1	Barley	cytosol	18.35	70.0
VIT_00s0265g00080.t01	Wine grape	cytosol, nucleus, plastid	20.22	60.67
EES19931	Sorghum	mitochondrion	51.31	54.8
Zm00001d038973_P001	Maize	mitochondrion	50.94	54.4
KRH20452	Soybean	mitochondrion	52.43	52.43
PGSC0003DMT400076437	Potato	plastid	52.81	52.42
KRH50046	Soybean	mitochondrion	51.31	52.29
Solyc02g078200.2.1	Tomato	nucleus	51.31	51.89
TraesCS1D01G396400.1	Wheat	mitochondrion	49.44	51.56
TraesCS1A01G388500.1	Wheat	mitochondrion	49.44	51.36
Os05t0557800-02	Rice	mitochondrion	47.94	51.2
TraesCS1B01G415900.1	Wheat	mitochondrion	49.44	51.16
VIT_14s0060g00010.t01	Wine grape	mitochondrion	16.48	49.44
GSMUA_Achr9P06220_001	Banana	mitochondrion	47.19	47.55
HORVU1Hr1G085550.1	Barley	plastid	47.57	39.69
Bra036763.1-P	Field mustard	plastid	24.72	32.51

Protein Annotations

MapMan:17.7.1.1.19	EnsemblPlantsGene:Bra024036	EnsemblPlants:Bra024036.1	EnsemblPlants:Bra024036.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:L21-like_sf	InterPro:L21p-like	UniProt:M4E5I2
HAMAP:MF_01363	PFAM:PF00829	ScanProsite:PS01169	PANTHER:PTHR21349	PANTHER:PTHR21349:SF0	InterPro:Ribosomal_L21
InterPro:Ribosomal_L21_CS	SUPFAM:SSF141091	TIGRFAMs:TIGR00061	UniParc:UPI0002540E99	SEG:seg	:

Description

AT4G30930 (E=1e-096) NFD1 | NFD1 (NUCLEAR FUSION DEFECTIVE 1); RNA binding / structural constituent of ribosome

Coordinates

chrA03:-:28042223..28043596

Molecular Weight (calculated)

29922.3 Da

IEP (calculated)

5.154

GRAVY (calculated)

-0.612

Length

267 amino acids

Sequence
(BLAST)

001: MASLRCLREL SRRATTVLSI NQTRLISSLP ISEPCGTTIT HATPRSLTRD LPWCNLCSRS QGRHFSSKAN DTDESSEGED DDDDGDDEEE DYEDSAEMEV
101: EREYSPAEKV EAAAEIGYKV MGPLKPSERL FKPYEPVFAV VQIGSHQFKV SNGDSIFTEK LKFCDINDKL VLTKVLLLGS ASQTIIGRPI LPDATVHAVV
201: EEHALDEKVL IFKKKRRKNY RRTTGHRQEL TKLRITDIQG IEKPEPTIVH KPSKAADTEQ PEAELVG

Best Arabidopsis Sequence Match ( AT4G30930.1 )
(BLAST)

001: MASLRCFREL SRRATTVFSI NQTRSISSFH GIEFSGTSIS HGTVIPNRSL TRNLPWYSHW YRSQDRCFSS NTKDTDEDEE SSEGEDDDEE EGEDFEDSAD
101: MEVEREYSPA EKVEEAEEIG YKVMGPLKPS ERLFKPYEPV FAIVQIGSHQ FKVSNGDSIF TEKLKFCDIN DKLELTKVLL LGSASQTIIG RPILPDATVH
201: AVVEEHALDE KVLIFKKKRR KNYRRTRGHR QELTKLRITD IQGIEKPEPK IVHKPSKEAV TEQTKAELVA

Arabidopsis Description

RPL21MNFD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UZG0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.