Factsheet for Solyc02g078200.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
mitochondrion 6

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076437	Potato	plastid	88.64	86.99
CDY23263	Canola	cytosol	45.45	71.86
HORVU4Hr1G013230.1	Barley	cytosol	18.18	68.57
HORVU6Hr1G043720.1	Barley	cytosol	12.88	68.0
VIT_00s0265g00080.t01	Wine grape	cytosol, nucleus, plastid	21.21	62.92
KRH50046	Soybean	mitochondrion	58.71	59.16
KRH20452	Soybean	mitochondrion	59.09	58.43
VIT_14s0060g00010.t01	Wine grape	mitochondrion	18.94	56.18
Os05t0557800-02	Rice	mitochondrion	51.14	54.0
EES19931	Sorghum	mitochondrion	50.76	53.6
Bra010267.1-P	Field mustard	mitochondrion	52.27	53.49
CDY36464	Canola	mitochondrion	51.14	52.94
TraesCS1A01G388500.1	Wheat	mitochondrion	51.52	52.92
CDY28228	Canola	mitochondrion	51.89	52.9
Zm00001d038973_P001	Maize	mitochondrion	50.0	52.8
TraesCS1B01G415900.1	Wheat	mitochondrion	51.52	52.71
Bra011233.1-P	Field mustard	mitochondrion	51.52	52.71
TraesCS1D01G396400.1	Wheat	mitochondrion	50.76	52.34
CDX68704	Canola	mitochondrion	51.14	52.33
CDY13395	Canola	mitochondrion	51.52	52.11
GSMUA_Achr9P06220_001	Banana	mitochondrion	52.27	52.08
AT4G30930.1	Thale cress	mitochondrion	53.03	51.85
Bra024036.1-P	Field mustard	mitochondrion	51.89	51.31
HORVU1Hr1G085550.1	Barley	plastid	50.76	41.88
Solyc06g065390.2.1	Tomato	plastid	27.65	34.43

Protein Annotations

MapMan:17.7.1.1.19	GO:GO:0000003	GO:GO:0000741	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005840	GO:GO:0006412	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009553	GO:GO:0009555	GO:GO:0009567
GO:GO:0009987	GO:GO:0010197	GO:GO:0016043	GO:GO:0019538	GO:GO:0030154	GO:GO:0043565
UniProt:K4B945	InterPro:L21-like_sf	InterPro:L21p-like	HAMAP:MF_01363	PFAM:PF00829	ScanProsite:PS01169
PANTHER:PTHR21349	PANTHER:PTHR21349:SF0	InterPro:Ribosomal_L21	InterPro:Ribosomal_L21_CS	SUPFAM:SSF141091	EnsemblPlantsGene:Solyc02g078200.2
EnsemblPlants:Solyc02g078200.2.1	TIGRFAMs:TIGR00061	UniParc:UPI00027680D2	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:+:42956117..42960378

Molecular Weight (calculated)

29863.4 Da

IEP (calculated)

6.879

GRAVY (calculated)

-0.661

Length

264 amino acids

Sequence
(BLAST)

001: MANRRCLQTL TRHLSYLLSP NPSLCSPQTL TPPLLNSINT LTSSPKCPQV TTQLSSFHRH FSSNRPSNSD EEEEDESEDE TDYDDDDDDD VEGFKSNSEP
101: GRVYTPEEKE YEAAEIGYKV IGPLQKSDRV FKPYEPVYAV IQIGSHQFKV SNGDSIFVEK LKFCEVNDKL ILNKVLLLGS KTQTIIGRPV LPDAAVHAVV
201: EEHALDAKVL IFKKKRRKNY RRTRGHRQEL TKLRITDIQG VEKPEVVPIL KTEKKDAKKV AVAA

Best Arabidopsis Sequence Match ( AT4G30930.1 )
(BLAST)

001: MASLRCFREL SRRATTVFSI NQTRSISSFH GIEFSGTSIS HGTVIPNRSL TRNLPWYSHW YRSQDRCFSS NTKDTDEDEE SSEGEDDDEE EGEDFEDSAD
101: MEVEREYSPA EKVEEAEEIG YKVMGPLKPS ERLFKPYEPV FAIVQIGSHQ FKVSNGDSIF TEKLKFCDIN DKLELTKVLL LGSASQTIIG RPILPDATVH
201: AVVEEHALDE KVLIFKKKRR KNYRRTRGHR QELTKLRITD IQGIEKPEPK IVHKPSKEAV TEQTKAELVA

Arabidopsis Description

RPL21MNFD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UZG0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.