CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23263	Canola	cytosol	61.63	95.21
CDY28228	Canola	mitochondrion	85.66	85.33
CDY36464	Canola	mitochondrion	81.78	82.75
CDY13395	Canola	mitochondrion	80.62	79.69
AT4G30930.1	Thale cress	mitochondrion	79.84	76.3
HORVU6Hr1G043720.1	Barley	cytosol	14.73	76.0
HORVU4Hr1G013230.1	Barley	cytosol	18.99	70.0
VIT_00s0265g00080.t01	Wine grape	cytosol, nucleus, plastid	19.77	57.3
EES19931	Sorghum	mitochondrion	51.16	52.8
Zm00001d038973_P001	Maize	mitochondrion	50.39	52.0
Solyc02g078200.2.1	Tomato	nucleus	52.33	51.14
PGSC0003DMT400076437	Potato	plastid	52.71	50.56
Os05t0557800-02	Rice	mitochondrion	48.45	50.0
KRH20452	Soybean	mitochondrion	51.55	49.81
VIT_14s0060g00010.t01	Wine grape	mitochondrion	17.05	49.44
TraesCS1A01G388500.1	Wheat	mitochondrion	48.84	49.03
KRH50046	Soybean	mitochondrion	49.61	48.85
TraesCS1D01G396400.1	Wheat	mitochondrion	48.45	48.83
TraesCS1B01G415900.1	Wheat	mitochondrion	48.45	48.45
GSMUA_Achr9P06220_001	Banana	mitochondrion	46.12	44.91
HORVU1Hr1G085550.1	Barley	plastid	47.67	38.44
CDX91752	Canola	plastid	24.03	30.54
CDY41872	Canola	plastid	23.26	29.56

Protein Annotations

MapMan:17.7.1.1.19	GO:A0A078BXX5	EnsemblPlants:CDX68704	ProteinID:CDX68704	ProteinID:CDX68704.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00130385001	InterPro:L21-like_sf
InterPro:L21p-like	HAMAP:MF_01363	PFAM:PF00829	ScanProsite:PS01169	PANTHER:PTHR21349	PANTHER:PTHR21349:SF0
InterPro:Ribosomal_L21	InterPro:Ribosomal_L21_CS	SUPFAM:SSF141091	TIGRFAMs:TIGR00061	UniParc:UPI0004EDC9F0	SEG:seg

Description

BnaC01g07490D

Coordinates

chrLK031789:-:822259..824000

Molecular Weight (calculated)

29037.6 Da

IEP (calculated)

6.637

GRAVY (calculated)

-0.522

Length

258 amino acids

Sequence
(BLAST)

001: MASLRCIREL SRRAMTVLSI SQTCLISSIR GLELSGTSIT HAAPIQNRSL TWDFPWYSRS QGRHFASKTN DTDESSDGED EDEEDSAEME VEREYSPAEK
101: VEAAAEIGYK VMGPLKPSER LFKPYEPVFA VVQIGSHQFK VSNGDSIFTE KLKFCDINDK LTLTKVLLLG SASQTIIGRP ILPDATVHAL VEEHALDEKV
201: LIFKKKRRKN YRRTTGHRQE LTKLRITDIQ GIEKPEPKIV HKPSKAVDTE QPEAELVG

Best Arabidopsis Sequence Match ( AT4G30930.1 )
(BLAST)

001: MASLRCFREL SRRATTVFSI NQTRSISSFH GIEFSGTSIS HGTVIPNRSL TRNLPWYSHW YRSQDRCFSS NTKDTDEDEE SSEGEDDDEE EGEDFEDSAD
101: MEVEREYSPA EKVEEAEEIG YKVMGPLKPS ERLFKPYEPV FAIVQIGSHQ FKVSNGDSIF TEKLKFCDIN DKLELTKVLL LGSASQTIIG RPILPDATVH
201: AVVEEHALDE KVLIFKKKRR KNYRRTRGHR QELTKLRITD IQGIEKPEPK IVHKPSKEAV TEQTKAELVA

Arabidopsis Description

RPL21MNFD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UZG0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.