Factsheet for PGSC0003DMT400076437

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g078200.2.1	Tomato	nucleus	86.99	88.64
CDY23263	Canola	cytosol	45.35	73.05
HORVU4Hr1G013230.1	Barley	cytosol	17.84	68.57
HORVU6Hr1G043720.1	Barley	cytosol	12.64	68.0
VIT_00s0265g00080.t01	Wine grape	cytosol, nucleus, plastid	20.45	61.8
KRH50046	Soybean	mitochondrion	55.76	57.25
KRH20452	Soybean	mitochondrion	56.13	56.55
VIT_14s0060g00010.t01	Wine grape	mitochondrion	18.59	56.18
EES19931	Sorghum	mitochondrion	50.56	54.4
Zm00001d038973_P001	Maize	mitochondrion	50.19	54.0
CDY36464	Canola	mitochondrion	50.93	53.73
Bra010267.1-P	Field mustard	mitochondrion	51.3	53.49
TraesCS1A01G388500.1	Wheat	mitochondrion	50.93	53.31
AT4G30930.1	Thale cress	mitochondrion	53.16	52.96
CDY28228	Canola	mitochondrion	50.93	52.9
CDY13395	Canola	mitochondrion	51.3	52.87
Bra024036.1-P	Field mustard	mitochondrion	52.42	52.81
Os05t0557800-02	Rice	mitochondrion	49.07	52.8
TraesCS1D01G396400.1	Wheat	mitochondrion	50.19	52.73
CDX68704	Canola	mitochondrion	50.56	52.71
TraesCS1B01G415900.1	Wheat	mitochondrion	50.56	52.71
Bra011233.1-P	Field mustard	mitochondrion	50.56	52.71
GSMUA_Achr9P06220_001	Banana	mitochondrion	49.44	50.19
HORVU1Hr1G085550.1	Barley	plastid	49.81	41.88
PGSC0003DMT400067084	Potato	plastid	26.02	32.41

Protein Annotations

EntrezGene:102590994	MapMan:17.7.1.1.19	GO:GO:0000003	GO:GO:0000741	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005840	GO:GO:0006412
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009553	GO:GO:0009555
GO:GO:0009567	GO:GO:0009987	GO:GO:0010197	GO:GO:0016043	GO:GO:0019538	GO:GO:0030154
GO:GO:0043565	InterPro:L21-like_sf	InterPro:L21p-like	UniProt:M1CWR8	HAMAP:MF_01363	PFAM:PF00829
EnsemblPlantsGene:PGSC0003DMG400029725	PGSC:PGSC0003DMG400029725	EnsemblPlants:PGSC0003DMT400076437	ScanProsite:PS01169	PANTHER:PTHR21349	PANTHER:PTHR21349:SF0
InterPro:Ribosomal_L21	InterPro:Ribosomal_L21_CS	SUPFAM:SSF141091	TIGRFAMs:TIGR00061	UniParc:UPI0002969CFE	RefSeq:XP_006347037.1
SEG:seg	:	:	:	:	:

Description

50S ribosomal protein L21, mitochondrial [Source:PGSC_GENE;Acc:PGSC0003DMG400029725]

Coordinates

chr2:+:33959516..33964020

Molecular Weight (calculated)

30222.7 Da

IEP (calculated)

6.722

GRAVY (calculated)

-0.650

Length

269 amino acids

Sequence
(BLAST)

001: MANRRCLQTL TRHLSYLLSP NPSLCSLNSI SPQTLTPALL NSINTLTSSP KCPQVSTKIS SFHRHFSSNR PSNSDDEEED ESEDETDYDD DGDDDVEGLE
101: SNSEPGREYT PEEKEHEAAE IGYKVIGPLQ KSDRVFKPYE PVYAVIQIGS HQFKVSNGDS IFVEKLKFCE VNDKLILNKV LLLGSKTQTI IGRPILPDAA
201: VHAVVEEHAL DAKVLIFKKK RRKNYRRTRG HRQELTKLRI TDIQGVEKPE VAPILKTEKK DAKKVAVAA

Best Arabidopsis Sequence Match ( AT4G30930.1 )
(BLAST)

001: MASLRCFREL SRRATTVFSI NQTRSISSFH GIEFSGTSIS HGTVIPNRSL TRNLPWYSHW YRSQDRCFSS NTKDTDEDEE SSEGEDDDEE EGEDFEDSAD
101: MEVEREYSPA EKVEEAEEIG YKVMGPLKPS ERLFKPYEPV FAIVQIGSHQ FKVSNGDSIF TEKLKFCDIN DKLELTKVLL LGSASQTIIG RPILPDATVH
201: AVVEEHALDE KVLIFKKKRR KNYRRTRGHR QELTKLRITD IQGIEKPEPK IVHKPSKEAV TEQTKAELVA

Arabidopsis Description

RPL21MNFD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UZG0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.