Factsheet for PGSC0003DMT400067084

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g065390.2.1	Tomato	plastid	93.52	95.28
VIT_15s0046g02910.t01	Wine grape	plastid	56.02	57.89
Bra036763.1-P	Field mustard	plastid	49.54	52.71
CDY41872	Canola	plastid	49.54	52.71
CDX91752	Canola	plastid	49.07	52.22
AT1G35680.1	Thale cress	plastid	49.54	48.64
EES06613	Sorghum	plastid	45.83	47.37
Os02t0259600-01	Rice	plastid	46.3	46.73
KRG91805	Soybean	nucleus, plastid	45.83	46.48
TraesCS6D01G174500.1	Wheat	mitochondrion	43.06	46.04
TraesCS6B01G219700.1	Wheat	mitochondrion	43.06	46.04
TraesCS6A01G191400.2	Wheat	mitochondrion	43.06	46.04
Zm00001d053377_P001	Maize	plastid	47.69	45.37
GSMUA_Achr8P19820_001	Banana	plastid	46.76	45.09
KRH34980	Soybean	mitochondrion, nucleus, plastid	43.52	44.13
Zm00001d016072_P001	Maize	plastid	46.3	42.37
HORVU6Hr1G041020.1	Barley	plastid	41.67	35.29
GSMUA_Achr5P06830_001	Banana	cytosol, plastid	22.22	31.58
PGSC0003DMT400076437	Potato	plastid	32.41	26.02

Protein Annotations

EntrezGene:102595243	MapMan:17.7.2.1.19	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009409	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009628	GO:GO:0009658	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009941	GO:GO:0009987	GO:GO:0010027	GO:GO:0016043	GO:GO:0019538	InterPro:L21-like_sf
InterPro:L21p-like	UniProt:M1CGN3	HAMAP:MF_01363	PFAM:PF00829	EnsemblPlantsGene:PGSC0003DMG400026078	PGSC:PGSC0003DMG400026078
EnsemblPlants:PGSC0003DMT400067084	ScanProsite:PS01169	PANTHER:PTHR21349	PANTHER:PTHR21349:SF2	InterPro:Ribosomal_L21	InterPro:Ribosomal_L21_CS
SUPFAM:SSF141091	TIGRFAMs:TIGR00061	UniParc:UPI0002956E1B	RefSeq:XP_006353627.1	SEG:seg	:

Description

50S ribosomal protein L21 [Source:PGSC_GENE;Acc:PGSC0003DMG400026078]

Coordinates

chr6:-:46473346..46476542

Molecular Weight (calculated)

23870.8 Da

IEP (calculated)

10.310

GRAVY (calculated)

-0.206

Length

216 amino acids

Sequence
(BLAST)

001: MATLSLCSTS SPSTALSKNQ TFLNTLSVPK ANSNVTFLSH SFSSLNLRFS KPNSLSSFVP KYSESEAPVA EIEADPEEPV ATPVVEATSL EPKREEIFAV
101: VMVGSRQYIV FPGRYIYTQR LKGANVNDKI ILNKVLLVGT KTSTWVGKPV VPNATVHAVV EEQLKDKKVI VFKYKKKKNY RRNIGHRQPI TRIRIMGITG
201: YQDSPAVTLA DLEAAK

Best Arabidopsis Sequence Match ( AT1G35680.1 )
(BLAST)

001: MASSSATLSL CSTFSAHCNV NSRRSSTILC SLSKPSLNLA KPLTGFLSPS TASTSRTAFT VAPKFAESVV EAEPETTDIE AVVVSDVSEV TEEKAKREEI
101: FAVIMVGGRQ YIVFPGRYLY TQRLKDANVD DQIVLNKVLL VGTKTHTYIG KPVVTNATVH AVVESQGLND KVVVFKYKPK KKYRRNIGHR QPNTRIRITG
201: ITGYEEYPAS PNVAVGEVNL

Arabidopsis Description

RPL2150S ribosomal protein L21, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P51412]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.