CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 21766870

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91805	Soybean	nucleus, plastid	75.12	75.12
VIT_15s0046g02910.t01	Wine grape	plastid	47.89	48.8
Bra036763.1-P	Field mustard	plastid	44.6	46.8
CDX91752	Canola	plastid	44.6	46.8
CDY41872	Canola	plastid	44.13	46.31
Solyc06g065390.2.1	Tomato	plastid	44.13	44.34
AT1G35680.1	Thale cress	plastid	45.07	43.64
PGSC0003DMT400067084	Potato	plastid	44.13	43.52
TraesCS6D01G174500.1	Wheat	mitochondrion	39.44	41.58
TraesCS6B01G219700.1	Wheat	mitochondrion	39.44	41.58
TraesCS6A01G191400.2	Wheat	mitochondrion	39.44	41.58
Os02t0259600-01	Rice	plastid	40.38	40.19
GSMUA_Achr8P19820_001	Banana	plastid	41.78	39.73
EES06613	Sorghum	plastid	38.97	39.71
Zm00001d053377_P001	Maize	plastid	39.91	37.44
Zm00001d016072_P001	Maize	plastid	39.44	35.59
HORVU6Hr1G041020.1	Barley	plastid	38.5	32.16
GSMUA_Achr5P06830_001	Banana	cytosol, plastid	18.78	26.32
KRH50046	Soybean	mitochondrion	31.46	25.57
KRH20452	Soybean	mitochondrion	31.46	25.09

Protein Annotations

EntrezGene:100527321	MapMan:17.7.2.1.19	EMBL:ACUP02006645	EMBL:BT092153	UniProt:C6T3Z2	EnsemblPlantsGene:GLYMA_10G216700
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlants:KRH34980
ProteinID:KRH34980	ProteinID:KRH34980.1	InterPro:L21-like_sf	InterPro:L21p-like	HAMAP:MF_01363	PFAM:PF00829
ScanProsite:PS01169	PANTHER:PTHR21349	PANTHER:PTHR21349:SF2	InterPro:Ribosomal_L21	InterPro:Ribosomal_L21_CS	SUPFAM:SSF141091
TIGRFAMs:TIGR00061	UniParc:UPI0001B15707	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:44835816..44838960

Molecular Weight (calculated)

23460.2 Da

IEP (calculated)

9.679

GRAVY (calculated)

-0.326

Length

213 amino acids

Sequence
(BLAST)

001: MATATVSIST LCATFGTHCA ISHDPKPLFS QPFSLNRFPS TSYKLTLSPR SPISTLPKVS ESAVAETETG SSEPEPDQIV PAQPPSWEPG LFAVVMIGGR
101: QYIVHPGRHL TVQRLKGANV NDKIALHKVL LVGTDTSCYI GKPIVTNAVV YATVEEQGLD PKVIVFKYKK KKHYRRNIGH RQPNTRIRIN SIMGYENYPK
201: VTMDDIKSDE PGS

Best Arabidopsis Sequence Match ( AT1G35680.1 )
(BLAST)

001: MASSSATLSL CSTFSAHCNV NSRRSSTILC SLSKPSLNLA KPLTGFLSPS TASTSRTAFT VAPKFAESVV EAEPETTDIE AVVVSDVSEV TEEKAKREEI
101: FAVIMVGGRQ YIVFPGRYLY TQRLKDANVD DQIVLNKVLL VGTKTHTYIG KPVVTNATVH AVVESQGLND KVVVFKYKPK KKYRRNIGHR QPNTRIRITG
201: ITGYEEYPAS PNVAVGEVNL

Arabidopsis Description

RPL2150S ribosomal protein L21, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P51412]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.