CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34980	Soybean	mitochondrion, nucleus, plastid	75.12	75.12
VIT_15s0046g02910.t01	Wine grape	plastid	50.23	51.2
Bra036763.1-P	Field mustard	plastid	45.54	47.78
CDX91752	Canola	plastid	45.54	47.78
CDY41872	Canola	plastid	44.13	46.31
PGSC0003DMT400067084	Potato	plastid	46.48	45.83
Solyc06g065390.2.1	Tomato	plastid	45.54	45.75
AT1G35680.1	Thale cress	plastid	46.95	45.45
TraesCS6D01G174500.1	Wheat	mitochondrion	40.85	43.07
TraesCS6B01G219700.1	Wheat	mitochondrion	40.85	43.07
TraesCS6A01G191400.2	Wheat	mitochondrion	40.85	43.07
Os02t0259600-01	Rice	plastid	41.78	41.59
EES06613	Sorghum	plastid	40.38	41.15
GSMUA_Achr8P19820_001	Banana	plastid	42.25	40.18
Zm00001d053377_P001	Maize	plastid	41.31	38.77
Zm00001d016072_P001	Maize	plastid	41.31	37.29
HORVU6Hr1G041020.1	Barley	plastid	39.91	33.33
GSMUA_Achr5P06830_001	Banana	cytosol, plastid	19.72	27.63
KRH20452	Soybean	mitochondrion	32.39	25.84
KRH50046	Soybean	mitochondrion	31.46	25.57

Protein Annotations

EntrezGene:100795152	MapMan:17.7.2.1.19	EMBL:ACUP02012707	EMBL:BT096524	UniProt:C6TFY0	EnsemblPlantsGene:GLYMA_20G175300
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlants:KRG91805
ProteinID:KRG91805	ProteinID:KRG91805.1	InterPro:L21-like_sf	InterPro:L21p-like	HAMAP:MF_01363	PFAM:PF00829
ScanProsite:PS01169	PANTHER:PTHR21349	PANTHER:PTHR21349:SF2	InterPro:Ribosomal_L21	InterPro:Ribosomal_L21_CS	SUPFAM:SSF141091
TIGRFAMs:TIGR00061	UniParc:UPI0001B1683E	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:41267683..41270859

Molecular Weight (calculated)

23448.2 Da

IEP (calculated)

9.679

GRAVY (calculated)

-0.362

Length

213 amino acids

Sequence
(BLAST)

001: MATATVSIST LCATFGTHCA ISHNPKPLFS QPFNLNHFPS NSYKLAFSPR SPLSPLPKAS ESAVAETEPG SAEPEPAQIS PAQPPSWEPG LFAVVMIGGR
101: QYIVHPGRHL TVQRLKGANV NDKIALHKVL LVGTDTSCYI GKPIVTNAVV YATVEEQGLD PKVIVFKYKK KKHYRRNIGH RQPNTRIRIN SIMGYENYPK
201: VTMDDIKSDE PES

Best Arabidopsis Sequence Match ( AT1G35680.1 )
(BLAST)

001: MASSSATLSL CSTFSAHCNV NSRRSSTILC SLSKPSLNLA KPLTGFLSPS TASTSRTAFT VAPKFAESVV EAEPETTDIE AVVVSDVSEV TEEKAKREEI
101: FAVIMVGGRQ YIVFPGRYLY TQRLKDANVD DQIVLNKVLL VGTKTHTYIG KPVVTNATVH AVVESQGLND KVVVFKYKPK KKYRRNIGHR QPNTRIRITG
201: ITGYEEYPAS PNVAVGEVNL

Arabidopsis Description

RPL2150S ribosomal protein L21, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P51412]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.