Factsheet for Os02t0259600-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 17189339
nucleus: 19621931
plastid: 21433289
nucleus: 24133045
plasma membrane: 27800704

msms PMID: 24133045 doi

DK Jaiswal, D Ray, MK Choudhary, P Subba, A Kumar, J Verma, R Kumar, A Datta, S Chakraborty, N Chakraborty

National Institute of Plant Genome Research, New Delhi, India.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06613	Sorghum	plastid	71.5	73.21
TraesCS6D01G174500.1	Wheat	mitochondrion	66.36	70.3
TraesCS6B01G219700.1	Wheat	mitochondrion	66.36	70.3
TraesCS6A01G191400.2	Wheat	mitochondrion	66.36	70.3
Zm00001d053377_P001	Maize	plastid	71.03	66.96
Zm00001d016072_P001	Maize	plastid	72.43	65.68
HORVU6Hr1G041020.1	Barley	plastid	67.29	56.47
GSMUA_Achr8P19820_001	Banana	plastid	53.74	51.34
Solyc06g065390.2.1	Tomato	plastid	47.66	48.11
VIT_15s0046g02910.t01	Wine grape	plastid	46.26	47.37
CDY41872	Canola	plastid	44.86	47.29
PGSC0003DMT400067084	Potato	plastid	46.73	46.3
Bra036763.1-P	Field mustard	plastid	43.46	45.81
CDX91752	Canola	plastid	43.46	45.81
AT1G35680.1	Thale cress	plastid	44.39	43.18
KRG91805	Soybean	nucleus, plastid	41.59	41.78
KRH34980	Soybean	mitochondrion, nucleus, plastid	40.19	40.38
GSMUA_Achr5P06830_001	Banana	cytosol, plastid	24.77	34.87
Os05t0557800-02	Rice	mitochondrion	33.18	28.4

Protein Annotations

MapMan:17.7.2.1.19	EntrezGene:4328932	EMBL:AK064863	EMBL:AK104384	ProteinID:BAD20071.1	ProteinID:BAD20117.1
ProteinID:BAF08393.1	ProteinID:BAS77976.1	ProteinID:EAZ22476.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0006950
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009409	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009628	GO:GO:0009658	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009941	GO:GO:0009987	GO:GO:0010027	GO:GO:0016043	GO:GO:0019538
InterPro:L21-like_sf	InterPro:L21p-like	HAMAP:MF_01363	EnsemblPlantsGene:Os02g0259600	EnsemblPlants:Os02t0259600-01	PFAM:PF00829
ScanProsite:PS01169	PANTHER:PTHR21349	PANTHER:PTHR21349:SF2	UniProt:Q6K241	InterPro:Ribosomal_L21	InterPro:Ribosomal_L21_CS
SUPFAM:SSF141091	TIGRFAMs:TIGR00061	UniParc:UPI0000375A3E	RefSeq:XP_015623613.1	SEG:seg	:

Description

Similar to 50S ribosomal protein L21, chloroplast precursor (CL21) (CS-L7). (Os02t0259600-01);Similar to 50S ribosomal protein L21. (Os02t0259600-02)

Coordinates

chr2:-:9005327..9007486

Molecular Weight (calculated)

23354.2 Da

IEP (calculated)

6.549

GRAVY (calculated)

-0.149

Length

214 amino acids

Sequence
(BLAST)

001: MATATLPLRL LASKTLAFPS APSLPASRCS LPVAASAPRR CWRLLASAEE PAPAPVEAEA EAEVVEEEEV EEEEAAVPEP VEAQIAAAGA GKDADIFAVV
101: MIGSRQYIVM PGRYIYTQRL KGANVNDQII LNKVLLVSTR DKAYIGMPVV TNAAVHAVVE EQGRDDKVIV FKYKKKKKYQ RKLGHRQPNT RLRITGISGY
201: EDFPADPILE YVPA

Best Arabidopsis Sequence Match ( AT1G35680.1 )
(BLAST)

001: MASSSATLSL CSTFSAHCNV NSRRSSTILC SLSKPSLNLA KPLTGFLSPS TASTSRTAFT VAPKFAESVV EAEPETTDIE AVVVSDVSEV TEEKAKREEI
101: FAVIMVGGRQ YIVFPGRYLY TQRLKDANVD DQIVLNKVLL VGTKTHTYIG KPVVTNATVH AVVESQGLND KVVVFKYKPK KKYRRNIGHR QPNTRIRITG
201: ITGYEEYPAS PNVAVGEVNL

Arabidopsis Description

RPL2150S ribosomal protein L21, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P51412]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.