Factsheet for VIT_15s0046g02910.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067084	Potato	plastid	57.89	56.02
Solyc06g065390.2.1	Tomato	plastid	56.46	55.66
Bra036763.1-P	Field mustard	plastid	52.63	54.19
CDY41872	Canola	plastid	52.63	54.19
CDX91752	Canola	plastid	52.15	53.69
KRG91805	Soybean	nucleus, plastid	51.2	50.23
AT1G35680.1	Thale cress	plastid	52.15	49.55
TraesCS6D01G174500.1	Wheat	mitochondrion	47.37	49.01
TraesCS6B01G219700.1	Wheat	mitochondrion	47.37	49.01
TraesCS6A01G191400.2	Wheat	mitochondrion	47.37	49.01
KRH34980	Soybean	mitochondrion, nucleus, plastid	48.8	47.89
GSMUA_Achr8P19820_001	Banana	plastid	50.24	46.88
Os02t0259600-01	Rice	plastid	47.37	46.26
Zm00001d053377_P001	Maize	plastid	49.28	45.37
EES06613	Sorghum	plastid	44.98	44.98
Zm00001d016072_P001	Maize	plastid	46.89	41.53
HORVU6Hr1G041020.1	Barley	plastid	45.45	37.25
VIT_00s0265g00080.t01	Wine grape	cytosol, nucleus, plastid	14.35	33.71
GSMUA_Achr5P06830_001	Banana	cytosol, plastid	22.49	30.92
VIT_14s0060g00010.t01	Wine grape	mitochondrion	11.0	25.84

Protein Annotations

EntrezGene:100255002	wikigene:100255002	MapMan:17.7.2.1.19	ProteinID:CBI40346	ProteinID:CBI40346.3	UniProt:D7UC81
EMBL:FN596755	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009409	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009628	GO:GO:0009658	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009941
GO:GO:0009987	GO:GO:0010027	GO:GO:0016043	GO:GO:0019538	InterPro:L21-like_sf	InterPro:L21p-like
EntrezGene:LOC100255002	wikigene:LOC100255002	HAMAP:MF_01363	PFAM:PF00829	ScanProsite:PS01169	PANTHER:PTHR21349
PANTHER:PTHR21349:SF2	InterPro:Ribosomal_L21	InterPro:Ribosomal_L21_CS	SUPFAM:SSF141091	TIGR:TC54009	TIGRFAMs:TIGR00061
UniParc:UPI00015CA807	ArrayExpress:VIT_15s0046g02910	EnsemblPlantsGene:VIT_15s0046g02910	EnsemblPlants:VIT_15s0046g02910.t01	unigene:Vvi.2202	RefSeq:XP_002272295
RefSeq:XP_002272295.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr15:+:19614092..19620183

Molecular Weight (calculated)

23127.9 Da

IEP (calculated)

10.461

GRAVY (calculated)

-0.321

Length

209 amino acids

Sequence
(BLAST)

001: MASATLAFFS SSLTPTATLS LKHKSSAPKK TLSFSNFGFL SPHSLTLSSR RPPSPLPKSS EFEPSVIEVE SSEPNSEALQ VVEEPPPELP KREEIFAVVM
101: IGSRQYIVFP GRYIYTQRLK GADVNDKIIL NRVLLVGTKT STYIGKPVVP NAAVHAVVEE QGLNPKVMVF KYKKKKNYRR NIGHRQPNTR IRITGITGYQ
201: DSPAVTLDS

Best Arabidopsis Sequence Match ( AT1G35680.1 )
(BLAST)

001: MASSSATLSL CSTFSAHCNV NSRRSSTILC SLSKPSLNLA KPLTGFLSPS TASTSRTAFT VAPKFAESVV EAEPETTDIE AVVVSDVSEV TEEKAKREEI
101: FAVIMVGGRQ YIVFPGRYLY TQRLKDANVD DQIVLNKVLL VGTKTHTYIG KPVVTNATVH AVVESQGLND KVVVFKYKPK KKYRRNIGHR QPNTRIRITG
201: ITGYEEYPAS PNVAVGEVNL

Arabidopsis Description

RPL2150S ribosomal protein L21, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P51412]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.