Factsheet for Zm00001d053377_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06613	Sorghum	plastid	76.21	82.78
Zm00001d016072_P001	Maize	plastid	81.94	78.81
TraesCS6D01G174500.1	Wheat	mitochondrion	63.88	71.78
TraesCS6B01G219700.1	Wheat	mitochondrion	63.88	71.78
TraesCS6A01G191400.2	Wheat	mitochondrion	63.88	71.78
Os02t0259600-01	Rice	plastid	66.96	71.03
HORVU6Hr1G041020.1	Barley	plastid	62.11	55.29
Bra036763.1-P	Field mustard	plastid	45.81	51.23
CDX91752	Canola	plastid	45.81	51.23
GSMUA_Achr8P19820_001	Banana	plastid	50.22	50.89
CDY41872	Canola	plastid	44.49	49.75
Solyc06g065390.2.1	Tomato	plastid	46.26	49.53
VIT_15s0046g02910.t01	Wine grape	plastid	45.37	49.28
PGSC0003DMT400067084	Potato	plastid	45.37	47.69
AT1G35680.1	Thale cress	plastid	44.49	45.91
KRG91805	Soybean	nucleus, plastid	38.77	41.31
KRH34980	Soybean	mitochondrion, nucleus, plastid	37.44	39.91
GSMUA_Achr5P06830_001	Banana	cytosol, plastid	24.23	36.18
Zm00001d038973_P001	Maize	mitochondrion	30.84	28.0

Protein Annotations

EntrezGene:100280871	MapMan:17.7.2.1.19	ProteinID:AQK59343.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	UniProt:K7U9Z6	InterPro:L21-like_sf	InterPro:L21p-like	HAMAP:MF_01363
PFAM:PF00829	ScanProsite:PS01169	PANTHER:PTHR21349	PANTHER:PTHR21349:SF2	InterPro:Ribosomal_L21	InterPro:Ribosomal_L21_CS
SUPFAM:SSF141091	TIGRFAMs:TIGR00061	UniParc:UPI000222185B	EnsemblPlantsGene:Zm00001d053377	EnsemblPlants:Zm00001d053377_P001	EnsemblPlants:Zm00001d053377_T001
SEG:seg	:	:	:	:	:

Description

50S ribosomal protein L21 chloroplastic

Coordinates

chr4:+:228374544..228378081

Molecular Weight (calculated)

24801.1 Da

IEP (calculated)

8.849

GRAVY (calculated)

-0.146

Length

227 amino acids

Sequence
(BLAST)

001: MAQYYRCPPL SSSMTSLPAA VMATATTLPL GLLPSKTLTL SPLPSARRSL SIAAVEPRRW LLRAAAEEAP EAVEVEFVEP DAEAEEEPAV PEPVEAQLAA
101: AGAGKDADIF AVVMIGSRQY IVMPGRYIYT QRLKGANVND QIILNKVLLV STREKAYIGM PVVTNAAVHA VVEEQGRDDK VIVFKYKKKK KYQRKLGHRQ
201: PNTRLRITGI SGYEEYPADP ILDPAAA

Best Arabidopsis Sequence Match ( AT1G35680.1 )
(BLAST)

001: MASSSATLSL CSTFSAHCNV NSRRSSTILC SLSKPSLNLA KPLTGFLSPS TASTSRTAFT VAPKFAESVV EAEPETTDIE AVVVSDVSEV TEEKAKREEI
101: FAVIMVGGRQ YIVFPGRYLY TQRLKDANVD DQIVLNKVLL VGTKTHTYIG KPVVTNATVH AVVESQGLND KVVVFKYKPK KKYRRNIGHR QPNTRIRITG
201: ITGYEEYPAS PNVAVGEVNL

Arabidopsis Description

RPL2150S ribosomal protein L21, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P51412]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.