Factsheet for Zm00001d016072_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870
nucleus: 24677780

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06613	Sorghum	plastid	80.08	90.43
Zm00001d053377_P001	Maize	plastid	78.81	81.94
Os02t0259600-01	Rice	plastid	65.68	72.43
TraesCS6D01G174500.1	Wheat	mitochondrion	59.75	69.8
TraesCS6B01G219700.1	Wheat	mitochondrion	59.75	69.8
TraesCS6A01G191400.2	Wheat	mitochondrion	59.75	69.8
HORVU6Hr1G041020.1	Barley	plastid	57.2	52.94
GSMUA_Achr8P19820_001	Banana	plastid	50.0	52.68
Bra036763.1-P	Field mustard	plastid	42.8	49.75
CDX91752	Canola	plastid	42.8	49.75
CDY41872	Canola	plastid	41.53	48.28
Solyc06g065390.2.1	Tomato	plastid	42.8	47.64
AT1G35680.1	Thale cress	plastid	44.07	47.27
VIT_15s0046g02910.t01	Wine grape	plastid	41.53	46.89
PGSC0003DMT400067084	Potato	plastid	42.37	46.3
KRG91805	Soybean	nucleus, plastid	37.29	41.31
KRH34980	Soybean	mitochondrion, nucleus, plastid	35.59	39.44
GSMUA_Achr5P06830_001	Banana	cytosol, plastid	22.46	34.87
Zm00001d038973_P001	Maize	mitochondrion	31.36	29.6

Protein Annotations

MapMan:17.7.2.1.19	UniProt:A0A1D6H5B5	ProteinID:AQK70014.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:L21-like_sf	InterPro:L21p-like	HAMAP:MF_01363	PFAM:PF00829
ScanProsite:PS01169	PANTHER:PTHR21349	PANTHER:PTHR21349:SF2	InterPro:Ribosomal_L21	InterPro:Ribosomal_L21_CS	SUPFAM:SSF141091
TIGRFAMs:TIGR00061	UniParc:UPI000845585F	EnsemblPlantsGene:Zm00001d016072	EnsemblPlants:Zm00001d016072_P001	EnsemblPlants:Zm00001d016072_T001	SEG:seg

Description

50S ribosomal protein L21 chloroplastic

Coordinates

chr5:+:142984198..142988371

Molecular Weight (calculated)

25843.4 Da

IEP (calculated)

9.668

GRAVY (calculated)

-0.194

Length

236 amino acids

Sequence
(BLAST)

001: MIPGLSSSEN STPSSSMRPL PAAAMATATL PLRLLPSKTL TLSTLPSLRR SLSVAALEPR RWRLRAAAEE APEAVEVEFV EPETEAEEKP AVPEPIEAQL
101: AAAGAGKDAD IFAVVMIGSR QYIVMPGRYI YTQRLKGANV NDQIILNKVL LVSTREKAYI GMPVVTNAAV HAVVEEQACL MHGRDDKVIV FKYKKKKKYQ
201: RKLGHRQPNT RLRITGISGY EEYPADPILD PAAALN

Best Arabidopsis Sequence Match ( AT1G35680.1 )
(BLAST)

001: MASSSATLSL CSTFSAHCNV NSRRSSTILC SLSKPSLNLA KPLTGFLSPS TASTSRTAFT VAPKFAESVV EAEPETTDIE AVVVSDVSEV TEEKAKREEI
101: FAVIMVGGRQ YIVFPGRYLY TQRLKDANVD DQIVLNKVLL VGTKTHTYIG KPVVTNATVH AVVESQGLND KVVVFKYKPK KKYRRNIGHR QPNTRIRITG
201: ITGYEEYPAS PNVAVGEVNL

Arabidopsis Description

RPL2150S ribosomal protein L21, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P51412]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.