Factsheet for Solyc06g065390.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067084	Potato	plastid	95.28	93.52
VIT_15s0046g02910.t01	Wine grape	plastid	55.66	56.46
Bra036763.1-P	Field mustard	plastid	50.0	52.22
CDY41872	Canola	plastid	50.0	52.22
CDX91752	Canola	plastid	49.53	51.72
AT1G35680.1	Thale cress	plastid	50.47	48.64
EES06613	Sorghum	plastid	47.64	48.33
Os02t0259600-01	Rice	plastid	48.11	47.66
TraesCS6D01G174500.1	Wheat	mitochondrion	44.81	47.03
TraesCS6B01G219700.1	Wheat	mitochondrion	44.81	47.03
TraesCS6A01G191400.2	Wheat	mitochondrion	44.81	47.03
Zm00001d053377_P001	Maize	plastid	49.53	46.26
KRG91805	Soybean	nucleus, plastid	45.75	45.54
GSMUA_Achr8P19820_001	Banana	plastid	48.11	45.54
KRH34980	Soybean	mitochondrion, nucleus, plastid	44.34	44.13
Zm00001d016072_P001	Maize	plastid	47.64	42.8
HORVU6Hr1G041020.1	Barley	plastid	43.4	36.08
GSMUA_Achr5P06830_001	Banana	cytosol, plastid	23.11	32.24
Solyc02g078200.2.1	Tomato	nucleus	34.43	27.65

Protein Annotations

MapMan:17.7.2.1.19	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009409	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009628	GO:GO:0009658	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009941
GO:GO:0009987	GO:GO:0010027	GO:GO:0016043	GO:GO:0019538	UniProt:K4C7G8	InterPro:L21-like_sf
InterPro:L21p-like	HAMAP:MF_01363	PFAM:PF00829	ScanProsite:PS01169	PANTHER:PTHR21349	PANTHER:PTHR21349:SF2
InterPro:Ribosomal_L21	InterPro:Ribosomal_L21_CS	SUPFAM:SSF141091	EnsemblPlantsGene:Solyc06g065390.2	EnsemblPlants:Solyc06g065390.2.1	TIGRFAMs:TIGR00061
UniParc:UPI0002765768	SEG:seg	:	:	:	:

Description

50S ribosomal protein L21, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G35680) UniProtKB/Swiss-Prot;Acc:P51412]

Coordinates

chr6:+:40806807..40810150

Molecular Weight (calculated)

23519.4 Da

IEP (calculated)

10.310

GRAVY (calculated)

-0.238

Length

212 amino acids

Sequence
(BLAST)

001: MATLSLCSTS SPSTALSKNQ TFLNTLSVPK ANSNVTFLSH SFSSLNLRFS KPNSLSSFVP KYSESEAPVA EVEADQEEPV VEATSLEPKR EEIFAVVMVG
101: SRQYIVFPGR YIYTQRLKGA NVNDKIILNK VLLVGTKTST WVGKPVVPNA TVHAVVEEQL KDKKVIVFKY KKKKNYRRNI GHRQPITRIR IMGITGYQDS
201: PAVTLADLEA AK

Best Arabidopsis Sequence Match ( AT1G35680.1 )
(BLAST)

001: MASSSATLSL CSTFSAHCNV NSRRSSTILC SLSKPSLNLA KPLTGFLSPS TASTSRTAFT VAPKFAESVV EAEPETTDIE AVVVSDVSEV TEEKAKREEI
101: FAVIMVGGRQ YIVFPGRYLY TQRLKDANVD DQIVLNKVLL VGTKTHTYIG KPVVTNATVH AVVESQGLND KVVVFKYKPK KKYRRNIGHR QPNTRIRITG
201: ITGYEEYPAS PNVAVGEVNL

Arabidopsis Description

RPL2150S ribosomal protein L21, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P51412]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.