Factsheet for VIT_00s0265g00080.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
plastid 2
cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G043720.1	Barley	cytosol	38.2	68.0
HORVU4Hr1G013230.1	Barley	cytosol	50.56	64.29
VIT_14s0060g00010.t01	Wine grape	mitochondrion	61.8	61.8
CDY23263	Canola	cytosol	55.06	29.34
KRH50046	Soybean	mitochondrion	65.17	22.14
KRH20452	Soybean	mitochondrion	65.17	21.72
Solyc02g078200.2.1	Tomato	nucleus	62.92	21.21
PGSC0003DMT400076437	Potato	plastid	61.8	20.45
Zm00001d038973_P001	Maize	mitochondrion	57.3	20.4
CDY13395	Canola	mitochondrion	59.55	20.31
Bra024036.1-P	Field mustard	mitochondrion	60.67	20.22
EES19931	Sorghum	mitochondrion	56.18	20.0
CDY36464	Canola	mitochondrion	57.3	20.0
Os05t0557800-02	Rice	mitochondrion	56.18	20.0
CDX68704	Canola	mitochondrion	57.3	19.77
CDY28228	Canola	mitochondrion	57.3	19.69
TraesCS1D01G396400.1	Wheat	mitochondrion	56.18	19.53
TraesCS1A01G388500.1	Wheat	mitochondrion	56.18	19.46
Bra011233.1-P	Field mustard	mitochondrion	56.18	19.38
AT4G30930.1	Thale cress	mitochondrion	58.43	19.26
TraesCS1B01G415900.1	Wheat	mitochondrion	55.06	18.99
Bra010267.1-P	Field mustard	mitochondrion	55.06	18.99
GSMUA_Achr9P06220_001	Banana	mitochondrion	56.18	18.87
HORVU1Hr1G085550.1	Barley	plastid	55.06	15.31
VIT_15s0046g02910.t01	Wine grape	plastid	33.71	14.35

Protein Annotations

EntrezGene:100852480	wikigene:100852480	MapMan:35.1	ProteinID:CBI23967	ProteinID:CBI23967.3	UniProt:D7T0D8
EMBL:FN595499	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	InterPro:L21-like_sf	InterPro:L21p-like	EntrezGene:LOC100852480
wikigene:LOC100852480	PFAM:PF00829	PANTHER:PTHR21349	PANTHER:PTHR21349:SF0	SUPFAM:SSF141091	UniParc:UPI0001BE242A
ArrayExpress:VIT_00s0265g00080	EnsemblPlantsGene:VIT_00s0265g00080	EnsemblPlants:VIT_00s0265g00080.t01	RefSeq:XP_003635167	RefSeq:XP_003635167.1	:

Description

No Description!

Coordinates

chrUn:-:19212905..19213806

Molecular Weight (calculated)

10000.6 Da

IEP (calculated)

4.823

GRAVY (calculated)

-0.515

Length

89 amino acids

Sequence
(BLAST)

1: MGESSDSEKV SASNRVYSAE DKERESAAIG YKVVGPLQPS DRVFKPYEPV FAVVQIGSHQ FKVSNGDCIY TERLKFCEVN DRYQTEVVC

Best Arabidopsis Sequence Match ( AT4G30930.1 )
(BLAST)

001: MASLRCFREL SRRATTVFSI NQTRSISSFH GIEFSGTSIS HGTVIPNRSL TRNLPWYSHW YRSQDRCFSS NTKDTDEDEE SSEGEDDDEE EGEDFEDSAD
101: MEVEREYSPA EKVEEAEEIG YKVMGPLKPS ERLFKPYEPV FAIVQIGSHQ FKVSNGDSIF TEKLKFCDIN DKLELTKVLL LGSASQTIIG RPILPDATVH
201: AVVEEHALDE KVLIFKKKRR KNYRRTRGHR QELTKLRITD IQGIEKPEPK IVHKPSKEAV TEQTKAELVA

Arabidopsis Description

RPL21MNFD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UZG0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.