CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23263	Canola	cytosol	63.53	97.01
Bra010267.1-P	Field mustard	mitochondrion	89.02	87.98
CDX68704	Canola	mitochondrion	82.75	81.78
CDY13395	Canola	mitochondrion	81.18	79.31
AT4G30930.1	Thale cress	mitochondrion	80.78	76.3
CDY28228	Canola	mitochondrion	77.25	76.06
HORVU6Hr1G043720.1	Barley	cytosol	14.9	76.0
HORVU4Hr1G013230.1	Barley	cytosol	19.22	70.0
VIT_00s0265g00080.t01	Wine grape	cytosol, nucleus, plastid	20.0	57.3
KRH20452	Soybean	mitochondrion	55.29	52.81
KRH50046	Soybean	mitochondrion	54.12	52.67
EES19931	Sorghum	mitochondrion	51.37	52.4
Zm00001d038973_P001	Maize	mitochondrion	50.98	52.0
Solyc02g078200.2.1	Tomato	nucleus	52.94	51.14
PGSC0003DMT400076437	Potato	plastid	53.73	50.93
Os05t0557800-02	Rice	mitochondrion	49.8	50.8
VIT_14s0060g00010.t01	Wine grape	mitochondrion	17.65	50.56
TraesCS1D01G396400.1	Wheat	mitochondrion	50.59	50.39
TraesCS1B01G415900.1	Wheat	mitochondrion	50.98	50.39
TraesCS1A01G388500.1	Wheat	mitochondrion	50.59	50.19
GSMUA_Achr9P06220_001	Banana	mitochondrion	50.2	48.3
HORVU1Hr1G085550.1	Barley	plastid	49.41	39.38
CDX91752	Canola	plastid	26.27	33.0
CDY41872	Canola	plastid	25.1	31.53

Protein Annotations

MapMan:17.7.1.1.19	GO:A0A078HGC3	UniProt:A0A078HGC3	EnsemblPlants:CDY36464	ProteinID:CDY36464	ProteinID:CDY36464.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00062116001
InterPro:L21-like_sf	InterPro:L21p-like	HAMAP:MF_01363	PFAM:PF00829	ScanProsite:PS01169	PANTHER:PTHR21349
PANTHER:PTHR21349:SF0	InterPro:Ribosomal_L21	InterPro:Ribosomal_L21_CS	SUPFAM:SSF141091	TIGRFAMs:TIGR00061	UniParc:UPI0004EE58B9
SEG:seg	:	:	:	:	:

Description

BnaC03g67840DBnaC03g67840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HGC3]

Coordinates

chrLK032376:+:336731..338068

Molecular Weight (calculated)

28867.3 Da

IEP (calculated)

8.228

GRAVY (calculated)

-0.649

Length

255 amino acids

Sequence
(BLAST)

001: MASLRCLREL SRRATTVLSI NQTRLISSVR RLEIPGTSIT HGIPSQNRSL TRDSPWYRSQ GRHFSSKTKD TDESSEGEDD DDEDYEEVER EYSPAEKVEA
101: AAEIGYKVMG PLKPSERLFK PYEPVFAVVQ IGSHQFKVSN GDSIFTEKLK FCDINDKLVL TKVLLLGSAS QTIIGRPILP DATVHAVVEE HALDEKVLIF
201: KKKRRKNYRR TTGHRQELTK LRITDIQGIE KPEPKIVHKP SKAADTEQPE AELVA

Best Arabidopsis Sequence Match ( AT4G30930.1 )
(BLAST)

001: MASLRCFREL SRRATTVFSI NQTRSISSFH GIEFSGTSIS HGTVIPNRSL TRNLPWYSHW YRSQDRCFSS NTKDTDEDEE SSEGEDDDEE EGEDFEDSAD
101: MEVEREYSPA EKVEEAEEIG YKVMGPLKPS ERLFKPYEPV FAIVQIGSHQ FKVSNGDSIF TEKLKFCDIN DKLELTKVLL LGSASQTIIG RPILPDATVH
201: AVVEEHALDE KVLIFKKKRR KNYRRTRGHR QELTKLRITD IQGIEKPEPK IVHKPSKEAV TEQTKAELVA

Arabidopsis Description

RPL21MNFD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UZG0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.