Factsheet for Bra010267.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36464	Canola	mitochondrion	87.98	89.02
Bra024036.1-P	Field mustard	mitochondrion	80.23	77.53
Bra011233.1-P	Field mustard	mitochondrion	75.97	75.97
AT4G30930.1	Thale cress	mitochondrion	78.29	74.81
HORVU6Hr1G043720.1	Barley	cytosol	14.34	74.0
HORVU4Hr1G013230.1	Barley	cytosol	18.6	68.57
VIT_00s0265g00080.t01	Wine grape	cytosol, nucleus, plastid	18.99	55.06
KRH20452	Soybean	mitochondrion	56.2	54.31
KRH50046	Soybean	mitochondrion	53.49	52.67
Solyc02g078200.2.1	Tomato	nucleus	53.49	52.27
EES19931	Sorghum	mitochondrion	50.0	51.6
PGSC0003DMT400076437	Potato	plastid	53.49	51.3
Zm00001d038973_P001	Maize	mitochondrion	49.61	51.2
Os05t0557800-02	Rice	mitochondrion	48.84	50.4
TraesCS1D01G396400.1	Wheat	mitochondrion	50.0	50.39
TraesCS1A01G388500.1	Wheat	mitochondrion	50.0	50.19
TraesCS1B01G415900.1	Wheat	mitochondrion	50.0	50.0
VIT_14s0060g00010.t01	Wine grape	mitochondrion	17.05	49.44
GSMUA_Achr9P06220_001	Banana	mitochondrion	48.84	47.55
HORVU1Hr1G085550.1	Barley	plastid	49.61	40.0
Bra036763.1-P	Field mustard	plastid	25.97	33.0

Protein Annotations

MapMan:17.7.1.1.19	EnsemblPlantsGene:Bra010267	EnsemblPlants:Bra010267.1	EnsemblPlants:Bra010267.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:L21-like_sf	InterPro:L21p-like	UniProt:M4D1B8
HAMAP:MF_01363	PFAM:PF00829	ScanProsite:PS01169	PANTHER:PTHR21349	PANTHER:PTHR21349:SF0	InterPro:Ribosomal_L21
InterPro:Ribosomal_L21_CS	SUPFAM:SSF141091	TIGRFAMs:TIGR00061	UniParc:UPI0002546EF5	SEG:seg	:

Description

AT4G30930 (E=4e-076) NFD1 | NFD1 (NUCLEAR FUSION DEFECTIVE 1); RNA binding / structural constituent of ribosome

Coordinates

chrA08:+:13541312..13542696

Molecular Weight (calculated)

29156.7 Da

IEP (calculated)

7.275

GRAVY (calculated)

-0.553

Length

258 amino acids

Sequence
(BLAST)

001: MASLRCLREL SRRATTVLSI NQTRLISSVR RLELPGTSIT HGIPITNQSL TRDLPWYRSQ GRHFSSKAKD TDESSEGEDD DDDEDYEDSA EMEVEREYSP
101: AEKVEAAAEI GYKVMGPLKS SERLFKLYEP VFAVVQIGSH QFKVSNGDSI FTEKLKFCDI NDKLVLTKVL LLGSASQTII GRPILPDATV HAVVEEHALD
201: EKVLIFKKKR RKNYRRTTGH RQELTKLRIT DIQGIEKPEP KIVHKPSKAA HTEAELVA

Best Arabidopsis Sequence Match ( AT4G30930.1 )
(BLAST)

001: MASLRCFREL SRRATTVFSI NQTRSISSFH GIEFSGTSIS HGTVIPNRSL TRNLPWYSHW YRSQDRCFSS NTKDTDEDEE SSEGEDDDEE EGEDFEDSAD
101: MEVEREYSPA EKVEEAEEIG YKVMGPLKPS ERLFKPYEPV FAIVQIGSHQ FKVSNGDSIF TEKLKFCDIN DKLELTKVLL LGSASQTIIG RPILPDATVH
201: AVVEEHALDE KVLIFKKKRR KNYRRTRGHR QELTKLRITD IQGIEKPEPK IVHKPSKEAV TEQTKAELVA

Arabidopsis Description

RPL21MNFD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UZG0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.