CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002000.1-P	Field mustard	cytosol	40.62	99.34
CDX71311	Canola	cytosol	90.28	95.71
AT2G16880.1	Thale cress	cytosol	82.73	82.5
VIT_13s0019g03690.t01	Wine grape	cytosol	34.14	51.84
Solyc01g111470.2.1	Tomato	plastid	49.66	49.46
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	40.62	49.26
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	40.62	49.26
KRH34922	Soybean	cytosol	29.69	47.93
GSMUA_Achr1P22450_001	Banana	mitochondrion	33.2	43.93
TraesCS4A01G045400.1	Wheat	plastid	38.87	38.45
KXG39937	Sorghum	cytosol, plastid	39.81	37.15
TraesCS4D01G259600.1	Wheat	cytosol	39.27	36.88
Os03t0201400-02	Rice	cytosol	39.14	36.43
Zm00001d028107_P001	Maize	nucleus	34.28	35.57
HORVU4Hr1G070310.1	Barley	plastid	39.27	34.81
CDY51888	Canola	cytosol, mitochondrion, plastid	18.76	28.14
CDX78962	Canola	cytosol	18.76	28.08
CDY36644	Canola	mitochondrion	23.62	27.65
CDX71231	Canola	mitochondrion	23.48	27.58
CDY10136	Canola	cytosol	13.09	26.5
CDY57780	Canola	endoplasmic reticulum	20.24	26.09
CDX86757	Canola	endoplasmic reticulum, extracellular	20.24	26.09
CDX94295	Canola	cytosol	6.21	25.99
CDY17611	Canola	cytosol	20.38	25.46
CDY21405	Canola	cytosol	14.44	25.3
CDY30265	Canola	mitochondrion	24.7	25.07
CDX74435	Canola	mitochondrion	24.97	24.83
CDY49798	Canola	mitochondrion	21.19	24.19
CDY17453	Canola	mitochondrion	14.84	23.97
CDY67116	Canola	cytosol	19.03	23.78
CDY04100	Canola	plastid	14.71	23.75
CDY47261	Canola	plastid	23.35	23.73
CDX74507	Canola	cytosol	18.89	23.61
CDX93473	Canola	mitochondrion	19.3	23.37
CDY04764	Canola	cytosol	11.07	23.16
CDX94941	Canola	cytosol, plastid	19.16	23.09
CDY11211	Canola	mitochondrion	22.81	22.81
CDY04754	Canola	cytosol	7.42	22.73
CDX94959	Canola	mitochondrion	18.35	22.37
CDX94298	Canola	mitochondrion	17.14	22.32
CDX93490	Canola	mitochondrion	17.95	22.17
CDX84733	Canola	plastid	18.35	22.15
CDY03072	Canola	mitochondrion	22.0	22.15
CDX87212	Canola	plastid	18.89	21.84
CDX80791	Canola	mitochondrion	17.54	21.63
CDX79463	Canola	plastid	17.95	21.56
CDY04753	Canola	mitochondrion, plastid	12.01	21.39
CDY50117	Canola	plastid	17.68	21.03
CDY42586	Canola	plastid	17.0	20.32
CDY39141	Canola	mitochondrion	18.89	20.23
CDX82665	Canola	mitochondrion, plastid	18.62	19.91
CDX89313	Canola	mitochondrion	19.97	10.94

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078H1T4	EnsemblPlants:CDY31404	ProteinID:CDY31404	ProteinID:CDY31404.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00047622001	InterPro:IPR002885
InterPro:IPR011990	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF993	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EDD91B
SEG:seg	:	:	:	:	:

Description

BnaA07g03390DBnaA07g03390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H1T4]

Coordinates

chrLK032271:+:350234..352459

Molecular Weight (calculated)

83102.0 Da

IEP (calculated)

6.564

GRAVY (calculated)

-0.213

Length

741 amino acids

Sequence
(BLAST)

001: MATLKPPESQ LLKTLSSILT SDKTHILETL NPYIPQITQP LLLSLFSSPS LAKRPETLLS LFHWAKTSTP EAFPSDSPLP LLSVVRSLIS HHKFADAKSL
101: LVSHILTTSD GPLSLSNSLL HPNLHLSPPP SKALLDVSLG AYLQAGKPHV ALHIFQKMVR LKLKPNPLTC NTLLIGLVRY PSSFSLANAR QVFHDMVKLG
201: VSLNAKTFNV LIHGFCLEGK LDDAVGMIER MVSEFSVQPD NVTYNTVLKA MSKKGRLNEV KELLLDMKKN GLVPNKDTYN NLVYGYCKLG SLTEAFQIVE
301: LMKQTNMLPD LRTYNMLMNG LCNEGSIKEA LELVDEMKEL KLLPDVVTYN TLIDGCFELG RSLDAKKLME QMVNLGVKPN QVTHNISLKW LCKEGKMEEV
401: SRKVKELVEV HGFSPDRVTY HTLIKGYLKA GDLNGALEMM REMGQKGIKM NTITLNTILD ALCKERKLDE ARSLLDSARK RGYIVDEVSY STLITGYFRE
501: EKVEKALEMW EEMKKIKIIP TVSTFNSLIG GLCHNGKTEL AMEKFDELAE SGLLPDDTTF NSIILGYCKE GRVEKAFEFY NESVRHSFKP DSYTCNILLN
601: GLCKEGMTEK ALNFFNSLIE EREVDTVTYN TMISGFCKDR KVKEAFDLLS EMEEKKLEPD RFTYNSIVTA LMEDGKLSEA EELLEKVSLK FGSAKQSLQG
701: ETHENAESKE ELNNTEGIAY SDVINELCSR GRSKGVTVEV T

Best Arabidopsis Sequence Match ( AT2G16880.1 )
(BLAST)

001: MATLKPPESQ LLKTLTSILT SEKTHFLETL NPYIPQITQP LLTSLLSSPS LAKKPETLVS FFQWAQTSIP EAFPSDSPLP LISVVRSLLS HHKFADAKSL
101: LVSYIRTSDA SLSLCNSLLH PNLHLSPPPS KALFDIALSA YLHEGKPHVA LQIFQKMIRL KLKPNLLTCN TLLIGLVRYP SSFSISSARE VFDDMVKIGV
201: SLNVQTFNVL VNGYCLEGKL EDALGMLERM VSEFKVNPDN VTYNTILKAM SKKGRLSDLK ELLLDMKKNG LVPNRVTYNN LVYGYCKLGS LKEAFQIVEL
301: MKQTNVLPDL CTYNILINGL CNAGSMREGL ELMDAMKSLK LQPDVVTYNT LIDGCFELGL SLEARKLMEQ MENDGVKANQ VTHNISLKWL CKEEKREAVT
401: RKVKELVDMH GFSPDIVTYH TLIKAYLKVG DLSGALEMMR EMGQKGIKMN TITLNTILDA LCKERKLDEA HNLLNSAHKR GFIVDEVTYG TLIMGFFREE
501: KVEKALEMWD EMKKVKITPT VSTFNSLIGG LCHHGKTELA MEKFDELAES GLLPDDSTFN SIILGYCKEG RVEKAFEFYN ESIKHSFKPD NYTCNILLNG
601: LCKEGMTEKA LNFFNTLIEE REVDTVTYNT MISAFCKDKK LKEAYDLLSE MEEKGLEPDR FTYNSFISLL MEDGKLSETD ELLKKFSGKF GSMKRDLQVE
701: TEKNPATSES KEELNTEAIA YSDVIDELCS RGRLKEHSRS YTS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g16880 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.