CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022891.1-P	Field mustard	plastid	99.35	99.35
CDX79463	Canola	plastid	95.11	94.65
AT2G32630.1	Thale cress	mitochondrion, plastid	80.29	79.01
VIT_08s0040g01530.t01	Wine grape	cytosol	50.81	50.32
HORVU2Hr1G019920.1	Barley	cytosol	28.01	45.99
GSMUA_Achr11P...	Banana	cytosol	35.18	43.99
KRG90304	Soybean	cytosol	39.9	43.67
KRH33556	Soybean	cytosol	14.66	43.06
EER99880	Sorghum	cytosol	32.41	41.63
PGSC0003DMT400027103	Potato	cytosol	26.87	40.34
Os07t0671200-00	Rice	extracellular	35.99	40.11
TraesCS2B01G133900.1	Wheat	plastid	34.2	39.03
TraesCS2A01G114800.1	Wheat	plastid	34.2	39.03
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	33.88	38.73
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	33.39	38.17
Solyc10g084080.1.1	Tomato	cytosol, extracellular	31.76	38.01
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	32.25	38.0
HORVU2Hr1G019880.2	Barley	cytosol	22.15	37.78
TraesCS2D01G115600.1	Wheat	cytosol, plastid	34.53	36.24
KRG93154	Soybean	plastid	47.39	30.47
PGSC0003DMT400027098	Potato	cytosol	27.2	27.02
PGSC0003DMT400027113	Potato	cytosol, plastid	43.0	26.14
CDY36644	Canola	mitochondrion	25.73	24.96
CDY51888	Canola	cytosol, mitochondrion, plastid	19.87	24.7
CDX86757	Canola	endoplasmic reticulum, extracellular	23.13	24.7
CDX71231	Canola	mitochondrion	25.08	24.41
CDY57780	Canola	endoplasmic reticulum	22.64	24.17
CDX94941	Canola	cytosol, plastid	24.1	24.07
CDX78962	Canola	cytosol	19.38	24.04
CDX93473	Canola	mitochondrion	23.94	24.02
CDX74507	Canola	cytosol	22.96	23.78
CDY67116	Canola	cytosol	22.96	23.78
CDX93490	Canola	mitochondrion	22.15	22.67
CDX87212	Canola	plastid	23.62	22.62
CDX94959	Canola	mitochondrion	21.99	22.2
CDY17611	Canola	cytosol	21.17	21.92
Solyc10g084090.1.1	Tomato	cytosol	47.56	21.84
CDY47261	Canola	plastid	25.57	21.54
CDX94295	Canola	cytosol	6.19	21.47
CDY30265	Canola	mitochondrion	25.41	21.37
CDY04100	Canola	plastid	15.96	21.35
CDY49798	Canola	mitochondrion	22.48	21.26
CDY10136	Canola	cytosol	12.54	21.04
CDY17453	Canola	mitochondrion	15.64	20.91
CDX74435	Canola	mitochondrion	25.24	20.81
CDY11211	Canola	mitochondrion	24.27	20.11
CDY50117	Canola	plastid	20.2	19.9
CDY21405	Canola	cytosol	13.68	19.86
CDY03072	Canola	mitochondrion	23.62	19.7
CDY42586	Canola	plastid	19.87	19.68
CDY04753	Canola	mitochondrion, plastid	13.03	19.23
CDY04764	Canola	cytosol	11.07	19.21
CDY04754	Canola	cytosol	7.49	19.01
CDY31404	Canola	cytosol	22.15	18.35
CDX80791	Canola	mitochondrion	17.92	18.3
CDX94298	Canola	mitochondrion	16.94	18.28
CDY39141	Canola	mitochondrion	20.36	18.06
CDX82665	Canola	mitochondrion, plastid	20.03	17.75
CDX71311	Canola	cytosol	19.71	17.31
CDX89313	Canola	mitochondrion	17.75	8.06

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlants:CDX84733	ProteinID:CDX84733	ProteinID:CDX84733.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00142018001	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF418
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EF45CE	SEG:seg

Description

BnaA03g14970D

Coordinates

chrLK031838:-:972029..973873

Molecular Weight (calculated)

69324.5 Da

IEP (calculated)

8.166

GRAVY (calculated)

-0.143

Length

614 amino acids

Sequence
(BLAST)

001: MNKQMSSAKL SRLFNITTKN QTPSPLPISD KQTAARITTY LQKSTVGKLQ SNPSLLFNLN PNVTLLVLSS PSLPTQSCVD FFKLLKTFES HLKPDLPAAI
101: ALSHRLYTDR RFLEMKSLLN SVSTDGAEII GSVCVYEGKV EFLETLFDLM IRVYVDKGMF QEGLRVFDYM VEKGMRIDER SCIVFLVAAK KRLEIDLCLE
201: VFKRMVDCGV RITVYSLTIV VEVLCRRGEV EKSRKLVREF YRKGIKPEAY TYNTIINAYV KVRDFSGVEE VLKEMGKGGV GYNKVTYTLL MEMSVKNGRM
301: GDAEKLFDEM RERGVELDVY LYTSMISLCC RKGNVKRAFL LFDELVEKGL SPSSHTYGAL IDGVCKVGEM GAAEILMNEM QSGGVDITKV VFNTLINGYC
401: RKRMIDEALA VYDVMEKKGF EADVFTFNTI ASCLNRLKRY DEAKEWIFRM MEGGVRLNTV SYTNLIDVYC KEGNVEEAKR LFVEMSSKGA EPNAITYNVM
501: IDAYCKQGKV KEARKLRADM EAKGMAPDSY TYTSLIHGEC IVDNVDEALR LFREMGSKGL DQSSVTYTVM ISGLSKAGKS DEAFGFYDEM KRKGFTIDHK
601: VYTALVGSLH SPET

Best Arabidopsis Sequence Match ( AT2G32630.1 )
(BLAST)

001: MNMSSSSRKL SRLFNIVTQN QKSPVLLSSD QEAARRITAC LVEKSTIGKL QSNPSLLFNL NSNVTRLVLS EPTLPTQSCI DFFKLLREFE SNLKPDLTAV
101: VTLSHRLYSN RRFNEMRSLL NSVVNDGFYK RPVEELGSAM VDCDISEEKF EFFEKFFDLV FRVYVDNGMF EEGLRVFDYM VKKGLSIDER SCIVFLVAAK
201: KRRRIDLCLE IFRRMVDSGV KITVYSLTIV VEGLCRRGEV EKSKKLIKEF SVKGIKPEAY TYNTIINAYV KQRDFSGVEG VLKVMKKDGV VYNKVTYTLL
301: MELSVKNGKM SDAEKLFDEM RERGIESDVH VYTSLISWNC RKGNMKRAFL LFDELTEKGL SPSSYTYGAL IDGVCKVGEM GAAEILMNEM QSKGVNITQV
401: VFNTLIDGYC RKGMVDEASM IYDVMEQKGF QADVFTCNTI ASCFNRLKRY DEAKQWLFRM MEGGVKLSTV SYTNLIDVYC KEGNVEEAKR LFVEMSSKGV
501: QPNAITYNVM IYAYCKQGKI KEARKLRANM EANGMDPDSY TYTSLIHGEC IADNVDEAMR LFSEMGLKGL DQNSVTYTVM ISGLSKAGKS DEAFGLYDEM
601: KRKGYTIDNK VYTALIGSMH SPET

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g32630 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8P6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.