CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019985.1-P	Field mustard	cytosol	95.42	95.42
CDX94941	Canola	cytosol, plastid	94.12	93.66
AT1G09820.1	Thale cress	mitochondrion, plastid	79.9	80.69
KRH29211	Soybean	cytosol	49.84	52.32
VIT_14s0060g01220.t01	Wine grape	mitochondrion	51.96	52.22
Solyc01g100450.1.1	Tomato	mitochondrion	48.04	48.59
PGSC0003DMT400007278	Potato	mitochondrion	48.04	48.59
Zm00001d039548_P001	Maize	mitochondrion	33.17	44.71
KXG31660	Sorghum	mitochondrion	24.67	44.15
GSMUA_Achr3P01360_001	Banana	mitochondrion	35.46	41.81
TraesCS1A01G160000.1	Wheat	mitochondrion	32.68	40.32
HORVU1Hr1G042440.2	Barley	mitochondrion	37.42	39.97
TraesCS1D01G157200.1	Wheat	mitochondrion	37.25	39.72
Os10t0484300-01	Rice	mitochondrion	37.42	39.62
TraesCS1B01G176600.2	Wheat	mitochondrion	37.25	38.84
CDY36644	Canola	mitochondrion	28.27	27.33
CDX71231	Canola	mitochondrion	27.78	26.94
CDX86757	Canola	endoplasmic reticulum, extracellular	23.37	24.87
CDY57780	Canola	endoplasmic reticulum	23.04	24.52
CDY17611	Canola	cytosol	23.69	24.45
CDX94298	Canola	mitochondrion	22.39	24.08
CDY04753	Canola	mitochondrion, plastid	16.34	24.04
CDX79463	Canola	plastid	24.18	23.99
CDX84733	Canola	plastid	24.02	23.94
CDY49798	Canola	mitochondrion	25.16	23.73
CDX94295	Canola	cytosol	6.86	23.73
CDX93490	Canola	mitochondrion	23.2	23.67
CDY50117	Canola	plastid	24.02	23.6
CDX74507	Canola	cytosol	22.71	23.44
CDY67116	Canola	cytosol	22.71	23.44
CDY42586	Canola	plastid	23.53	23.23
CDY10136	Canola	cytosol	13.89	23.22
CDX94959	Canola	mitochondrion	22.71	22.86
CDY30265	Canola	mitochondrion	26.8	22.47
CDY47261	Canola	plastid	26.63	22.36
CDX74435	Canola	mitochondrion	27.12	22.28
CDY21405	Canola	cytosol	15.36	22.22
CDY11211	Canola	mitochondrion	26.8	22.13
CDY03072	Canola	mitochondrion	26.47	22.01
CDY51888	Canola	cytosol, mitochondrion, plastid	17.32	21.46
CDX78962	Canola	cytosol	17.32	21.41
CDX87212	Canola	plastid	22.06	21.06
CDY31404	Canola	cytosol	23.37	19.3
CDY04764	Canola	cytosol	11.11	19.21
CDX80791	Canola	mitochondrion	18.79	19.13
CDY17453	Canola	mitochondrion	14.22	18.95
CDY39141	Canola	mitochondrion	20.91	18.5
CDX71311	Canola	cytosol	21.08	18.45
CDX82665	Canola	mitochondrion, plastid	20.75	18.33
CDY04100	Canola	plastid	13.4	17.86
CDY04754	Canola	cytosol	5.23	13.22
CDX89313	Canola	mitochondrion	24.02	10.86

Protein Annotations

EnsemblPlants:CDX93473	EnsemblPlantsGene:GSBRNA2T00156142001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF745
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDX93473	ProteinID:CDX93473.1	TIGRFAMs:TIGR00756
UniParc:UPI0004EF2E06	MapMan:35.1	:	:	:	:

Description

BnaA06g05750D

Coordinates

chrLK031876:+:351009..352847

Molecular Weight (calculated)

69142.7 Da

IEP (calculated)

9.242

GRAVY (calculated)

-0.189

Length

612 amino acids

Sequence
(BLAST)

001: MLIKSRKFSD LKYVFPRKFS RLTTLCPSSS PITKSPCPPS RDDVAAIADL IEKQHWSKLK LLHVKDINNP NELFHQLISS NLDPELCLRY YTWLIANNRS
101: ISLSLELTFN LLHSLANAKK YSKIRSFLDG FVKKRSDHPV HSIFHAISLC DNLCVNSILA DMLVLAYANN SRFELALEAF KRSGYYGYKL SALSCKPLMV
201: ALLNEKRFAD VEFVYKEMIR RRIQPNVFTF NVVINSFCKK GKMEKAKDVM EDMKVYGTSP DVVSYNTLID GYCKLGGVGK MYKADAVLKE MVESSKVSPN
301: LTTFNILIDG FWKDGNYSGS MKVFREMLEQ DVKPNVVTYN SLINGLCSVG KVSEATCMRD KMVGAGVEPN LITYNSLING FCKNGMMKEA LDMFESLKGR
401: GIVLTARTYN MLIDAYCKSG KVEDGFGLKE EMEREGIVAN VETYNCLIGG LCRNGNMEAA MKLFDQLSGK ALPDLVTYHI LMDGYCSRGE TRKAAMLLRE
501: GISKMGLKPR HLTYNILMEG YCKEGNLKGA ANVRIQMEKE RRLRMNVASY NVLLQGYSQK GKMEDANRLL NEMLEKGLIP NRITYEIVKA EMVDKGFVPD
601: IQGHLFNVST KS

Best Arabidopsis Sequence Match ( AT1G09820.1 )
(BLAST)

001: MFPKSLAVSR KNSNLTKGVS GLRRLCSSSS TITGSPCPPR YDVAVIADLI EKQHWSKLGV HVTDINPNEL FRQLISSELD PDLCLRYYSW LVKNSDISVS
101: LELTFKLLHS LANAKRYSKI RSFLDGFVRN GSDHQVHSIF HAISMCDNVC VNSIIADMLV LAYANNSRFE LGFEAFKRSG YYGYKLSALS CKPLMIALLK
201: ENRSADVEYV YKEMIRRKIQ PNVFTFNVVI NALCKTGKMN KARDVMEDMK VYGCSPNVVS YNTLIDGYCK LGGNGKMYKA DAVLKEMVEN DVSPNLTTFN
301: ILIDGFWKDD NLPGSMKVFK EMLDQDVKPN VISYNSLING LCNGGKISEA ISMRDKMVSA GVQPNLITYN ALINGFCKND MLKEALDMFG SVKGQGAVPT
401: TRMYNMLIDA YCKLGKIDDG FALKEEMERE GIVPDVGTYN CLIAGLCRNG NIEAAKKLFD QLTSKGLPDL VTFHILMEGY CRKGESRKAA MLLKEMSKMG
501: LKPRHLTYNI VMKGYCKEGN LKAATNMRTQ MEKERRLRMN VASYNVLLQG YSQKGKLEDA NMLLNEMLEK GLVPNRITYE IVKEEMVDQG FVPDIEGHLF
601: NVSTKS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g09820 [Source:UniProtKB/Swiss-Prot;Acc:O04504]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.