Factsheet for Solyc01g100450.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007278	Potato	mitochondrion	97.52	97.52
KRH29211	Soybean	cytosol	54.71	56.78
VIT_14s0060g01220.t01	Wine grape	mitochondrion	56.53	56.16
AT1G09820.1	Thale cress	mitochondrion, plastid	49.09	49.01
Bra019985.1-P	Field mustard	cytosol	48.59	48.04
CDX93473	Canola	mitochondrion	48.59	48.04
CDX94941	Canola	cytosol, plastid	48.76	47.97
KXG31660	Sorghum	mitochondrion	26.94	47.66
GSMUA_Achr3P01360_001	Banana	mitochondrion	40.5	47.21
Zm00001d039548_P001	Maize	mitochondrion	35.21	46.92
TraesCS1A01G160000.1	Wheat	mitochondrion	35.7	43.55
HORVU1Hr1G042440.2	Barley	mitochondrion	39.01	41.19
TraesCS1D01G157200.1	Wheat	mitochondrion	39.01	41.12
TraesCS1B01G176600.2	Wheat	mitochondrion	39.5	40.72
Os10t0484300-01	Rice	mitochondrion	38.68	40.48
Solyc11g011410.1.1	Tomato	cytosol	23.64	29.79
Solyc10g084080.1.1	Tomato	cytosol, extracellular	21.98	25.93
Solyc01g109060.2.1	Tomato	mitochondrion	25.12	24.6
Solyc07g047620.1.1	Tomato	cytosol, mitochondrion	20.99	23.96
Solyc03g007390.2.1	Tomato	plastid	24.96	23.78
Solyc01g108410.1.1	Tomato	mitochondrion	29.26	23.08
Solyc04g050550.1.1	Tomato	cytosol	22.15	22.79
Solyc02g021280.1.1	Tomato	endoplasmic reticulum	26.28	20.95
Solyc01g111470.2.1	Tomato	plastid	25.12	20.43
Solyc05g008560.1.1	Tomato	mitochondrion	24.96	20.03
Solyc06g010270.1.1	Tomato	mitochondrion	15.04	19.65
Solyc02g068890.2.1	Tomato	mitochondrion	22.48	18.99
Solyc06g069700.2.1	Tomato	plastid	23.97	17.99
Solyc10g084090.1.1	Tomato	cytosol	26.45	11.97

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4B179
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF745	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF81901	EnsemblPlantsGene:Solyc01g100450.1	EnsemblPlants:Solyc01g100450.1.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00027676CC
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:90475240..90477057

Molecular Weight (calculated)

68771.9 Da

IEP (calculated)

8.395

GRAVY (calculated)

-0.224

Length

605 amino acids

Sequence
(BLAST)

001: MSLTYFRRLH HSRLPLRCLH TANSEPTSTS TPNLFSDPLF KSKVSELISN QHWSQLKELI KPFNPTSFLE QLLGSGFDSS SILGFFRWSQ FYQVYHHPLE
101: HLCRVLVLLV NDKKYPKVRS LLHDFVKNGK TYTVSSVFHT LLTCSDNVCA NSIIVDMLVL SYVNNGKLDL ALEAFRRAGD YGFKLSVFSC KPMLKGVVKE
201: GKFEVGELVY KEMIRRRIEV DLYTFNIVIN GLCKAGKLNK ARDVMEDMKV RGIIPNEVTY NTLIDGYCKR GGDGKMYKAD ALLRELVEQG VSPNERTYNT
301: LIDGFCKDDN VGAAMKLFKE MQHQGMRPDI VTFNSLIDGL FGDGKVDEAL GLRAEMIRLG LEPNIRTYNV MINGFSKMKM FREAKELFDD VMKQGLDLNV
401: LTFNTVIDAH GKAGKMEEAV ALRELMLSKL ICPTISTYNC LLGGYYREGN VGAAKELLEE MEKKSVMADL VTYNIRIDAM CKRGESRKAV RLLDEMSEKR
501: LVPSHVTYNI LMAGYCQEGN PRAAVTIRKR MEKEGKHPNV VTYNVLIKGF CQKDKLEEAN ALLNEMLEKG LVPNRITYDI IREEMIDKGF VPDIDGHLYK
601: DTVNC

Best Arabidopsis Sequence Match ( AT1G09820.1 )
(BLAST)

001: MFPKSLAVSR KNSNLTKGVS GLRRLCSSSS TITGSPCPPR YDVAVIADLI EKQHWSKLGV HVTDINPNEL FRQLISSELD PDLCLRYYSW LVKNSDISVS
101: LELTFKLLHS LANAKRYSKI RSFLDGFVRN GSDHQVHSIF HAISMCDNVC VNSIIADMLV LAYANNSRFE LGFEAFKRSG YYGYKLSALS CKPLMIALLK
201: ENRSADVEYV YKEMIRRKIQ PNVFTFNVVI NALCKTGKMN KARDVMEDMK VYGCSPNVVS YNTLIDGYCK LGGNGKMYKA DAVLKEMVEN DVSPNLTTFN
301: ILIDGFWKDD NLPGSMKVFK EMLDQDVKPN VISYNSLING LCNGGKISEA ISMRDKMVSA GVQPNLITYN ALINGFCKND MLKEALDMFG SVKGQGAVPT
401: TRMYNMLIDA YCKLGKIDDG FALKEEMERE GIVPDVGTYN CLIAGLCRNG NIEAAKKLFD QLTSKGLPDL VTFHILMEGY CRKGESRKAA MLLKEMSKMG
501: LKPRHLTYNI VMKGYCKEGN LKAATNMRTQ MEKERRLRMN VASYNVLLQG YSQKGKLEDA NMLLNEMLEK GLVPNRITYE IVKEEMVDQG FVPDIEGHLF
601: NVSTKS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g09820 [Source:UniProtKB/Swiss-Prot;Acc:O04504]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.