CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93473	Canola	mitochondrion	93.66	94.12
Bra019985.1-P	Field mustard	cytosol	92.85	93.3
AT1G09820.1	Thale cress	mitochondrion, plastid	78.21	79.37
KRH29211	Soybean	cytosol	49.76	52.49
VIT_14s0060g01220.t01	Wine grape	mitochondrion	51.71	52.22
Solyc01g100450.1.1	Tomato	mitochondrion	47.97	48.76
PGSC0003DMT400007278	Potato	mitochondrion	47.97	48.76
Zm00001d039548_P001	Maize	mitochondrion	32.85	44.49
KXG31660	Sorghum	mitochondrion	24.39	43.86
GSMUA_Achr3P01360_001	Banana	mitochondrion	36.26	42.97
TraesCS1A01G160000.1	Wheat	mitochondrion	32.68	40.52
Os10t0484300-01	Rice	mitochondrion	37.72	40.14
HORVU1Hr1G042440.2	Barley	mitochondrion	37.07	39.79
TraesCS1D01G157200.1	Wheat	mitochondrion	37.07	39.72
TraesCS1B01G176600.2	Wheat	mitochondrion	37.07	38.84
CDY36644	Canola	mitochondrion	28.13	27.33
CDX71231	Canola	mitochondrion	27.48	26.78
CDX86757	Canola	endoplasmic reticulum, extracellular	23.41	25.04
CDY57780	Canola	endoplasmic reticulum	23.09	24.7
CDY04753	Canola	mitochondrion, plastid	16.59	24.52
CDX93490	Canola	mitochondrion	23.58	24.17
CDX79463	Canola	plastid	24.23	24.15
CDX84733	Canola	plastid	24.07	24.1
CDX94298	Canola	mitochondrion	22.28	24.08
CDY17611	Canola	cytosol	23.09	23.95
CDY49798	Canola	mitochondrion	25.2	23.88
CDY10136	Canola	cytosol	14.15	23.77
CDX94295	Canola	cytosol	6.83	23.73
CDX94959	Canola	mitochondrion	23.25	23.52
CDX74507	Canola	cytosol	22.6	23.44
CDY67116	Canola	cytosol	22.6	23.44
CDY50117	Canola	plastid	23.74	23.43
CDY42586	Canola	plastid	23.25	23.06
CDY47261	Canola	plastid	26.99	22.77
CDY30265	Canola	mitochondrion	26.83	22.6
CDX74435	Canola	mitochondrion	27.32	22.55
CDY11211	Canola	mitochondrion	26.83	22.27
CDY21405	Canola	cytosol	15.28	22.22
CDY03072	Canola	mitochondrion	26.5	22.15
CDY51888	Canola	cytosol, mitochondrion, plastid	17.24	21.46
CDX78962	Canola	cytosol	17.24	21.41
CDX87212	Canola	plastid	21.95	21.06
CDY31404	Canola	cytosol	23.09	19.16
CDY17453	Canola	mitochondrion	14.15	18.95
CDY04764	Canola	cytosol	10.89	18.93
CDX80791	Canola	mitochondrion	18.37	18.8
CDY39141	Canola	mitochondrion	20.81	18.5
CDX82665	Canola	mitochondrion, plastid	20.65	18.33
CDX71311	Canola	cytosol	20.81	18.31
CDY04100	Canola	plastid	13.33	17.86
CDY04754	Canola	cytosol	5.2	13.22
CDX89313	Canola	mitochondrion	23.58	10.72

Protein Annotations

EnsemblPlants:CDX94941	EnsemblPlantsGene:GSBRNA2T00100423001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF745
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDX94941	ProteinID:CDX94941.1	SEG:seg
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	UniParc:UPI0004EEF3CD	MapMan:35.1	:	:

Description

BnaC05g07300D

Coordinates

chrLK031886:+:289110..290990

Molecular Weight (calculated)

69245.7 Da

IEP (calculated)

9.257

GRAVY (calculated)

-0.182

Length

615 amino acids

Sequence
(BLAST)

001: MSNQMLIKSF VTKRKFSDLK DVFPRKLSRL STLCSSSSTI PKSPCPPRDD VAVIAELIEK QHWSNLKLHV KDTNPNELFH QLISSNLDPE LCLRYYTWLA
101: NNRNISLSLE LTFNLLHSLA NAKKYSKIRS FLHGFVKKRS DHPIHSIFHA ISLCDNVCVN SILADMLVLA YANNSRFASA LEAFKRAGYY AFKLSALSCK
201: PLMVALLNEK RFADVEFVYK EMIRRRIQPN VFTFNVVINS FCKIGKMEKA KDVMEDMKVY GTSPDVVSYN TLIDGYCKLG GIGKMYKADA VLKEMVESKV
301: SPNLTTFNIL IDGFWKDGNY SGSMKVFREM LEQDVKPNVV TYNSLINGLC SGGKVSEATC MHDKMVSAGV EPNLVTYNSL INGFCKNGMM KEALDMFESL
401: KGRGIVLTAK TYNILIDAYC KSGKVEDGFG LKEEMEREGI VANVETYNCL IGGLCRNGSM EAAKKLFDQL SGKALPDLVT YHILMDGYCS RGETRKAAML
501: LREGISKMGL KPRHLTYNIL MEGYCKEGNL KGAANVRMQM EKERRLRMNV ASYNVLLQGY SQKGKMEDAN RLLNEMLEKG LIPNRITYEI VKAEMVDKGF
601: VPDIGGHLFN VSTKS

Best Arabidopsis Sequence Match ( AT1G09820.1 )
(BLAST)

001: MFPKSLAVSR KNSNLTKGVS GLRRLCSSSS TITGSPCPPR YDVAVIADLI EKQHWSKLGV HVTDINPNEL FRQLISSELD PDLCLRYYSW LVKNSDISVS
101: LELTFKLLHS LANAKRYSKI RSFLDGFVRN GSDHQVHSIF HAISMCDNVC VNSIIADMLV LAYANNSRFE LGFEAFKRSG YYGYKLSALS CKPLMIALLK
201: ENRSADVEYV YKEMIRRKIQ PNVFTFNVVI NALCKTGKMN KARDVMEDMK VYGCSPNVVS YNTLIDGYCK LGGNGKMYKA DAVLKEMVEN DVSPNLTTFN
301: ILIDGFWKDD NLPGSMKVFK EMLDQDVKPN VISYNSLING LCNGGKISEA ISMRDKMVSA GVQPNLITYN ALINGFCKND MLKEALDMFG SVKGQGAVPT
401: TRMYNMLIDA YCKLGKIDDG FALKEEMERE GIVPDVGTYN CLIAGLCRNG NIEAAKKLFD QLTSKGLPDL VTFHILMEGY CRKGESRKAA MLLKEMSKMG
501: LKPRHLTYNI VMKGYCKEGN LKAATNMRTQ MEKERRLRMN VASYNVLLQG YSQKGKLEDA NMLLNEMLEK GLVPNRITYE IVKEEMVDQG FVPDIEGHLF
601: NVSTKS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g09820 [Source:UniProtKB/Swiss-Prot;Acc:O04504]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.