CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 1
extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040883.1-P	Field mustard	endoplasmic reticulum	95.48	95.48
CDX86757	Canola	endoplasmic reticulum, extracellular	94.09	94.09
AT4G11690.1	Thale cress	endoplasmic reticulum	78.09	79.33
VIT_06s0004g04770.t01	Wine grape	plastid	55.13	56.31
KRH50360	Soybean	cytosol, extracellular, plastid	50.26	51.98
KRH51875	Soybean	cytosol	50.61	51.23
PGSC0003DMT400058577	Potato	plastid	49.39	50.62
KRH02112	Soybean	extracellular, mitochondrion	47.3	50.18
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	38.96	48.28
Os05t0583950-00	Rice	mitochondrion	30.61	42.93
GSMUA_Achr6P34120_001	Banana	cytosol	36.35	42.05
OQU87837	Sorghum	plastid	29.91	41.95
Zm00001d042911_P001	Maize	mitochondrion, plastid	29.57	41.46
TraesCS3D01G353400.1	Wheat	cytosol	27.65	38.78
HORVU3Hr1G086290.19	Barley	plastid	27.3	38.57
TraesCS3A01G359100.1	Wheat	cytosol	26.78	37.56
CDY51888	Canola	cytosol, mitochondrion, plastid	22.96	26.72
CDX78962	Canola	cytosol	22.61	26.26
CDX94295	Canola	cytosol	7.83	25.42
CDY21405	Canola	cytosol	17.74	24.11
CDX71231	Canola	mitochondrion	26.26	23.93
CDY36644	Canola	mitochondrion	26.09	23.7
CDX74507	Canola	cytosol	23.83	23.1
CDX94941	Canola	cytosol, plastid	24.7	23.09
CDX93473	Canola	mitochondrion	24.52	23.04
CDY67116	Canola	cytosol	23.65	22.93
CDX84733	Canola	plastid	24.17	22.64
CDX79463	Canola	plastid	24.17	22.53
CDY04100	Canola	plastid	17.57	22.0
CDY17611	Canola	cytosol	22.61	21.92
CDY17453	Canola	mitochondrion	17.39	21.79
CDX93490	Canola	mitochondrion	22.61	21.67
CDY10136	Canola	cytosol	13.57	21.31
CDX87212	Canola	plastid	23.65	21.22
CDY04764	Canola	cytosol	12.87	20.9
CDX94959	Canola	mitochondrion	22.09	20.89
CDY30265	Canola	mitochondrion	26.43	20.82
CDX74435	Canola	mitochondrion	26.78	20.67
CDY47261	Canola	plastid	25.91	20.44
CDX82665	Canola	mitochondrion, plastid	24.52	20.35
CDY11211	Canola	mitochondrion	26.09	20.24
CDY31404	Canola	cytosol	26.09	20.24
CDY39141	Canola	mitochondrion	24.35	20.23
CDY04753	Canola	mitochondrion, plastid	14.61	20.19
CDY03072	Canola	mitochondrion	25.04	19.57
CDX94298	Canola	mitochondrion	18.96	19.16
CDY49798	Canola	mitochondrion	21.39	18.95
CDX71311	Canola	cytosol	22.61	18.6
CDX80791	Canola	mitochondrion	19.13	18.3
CDY04754	Canola	cytosol	7.48	17.77
CDY50117	Canola	plastid	18.96	17.5
CDY42586	Canola	plastid	18.43	17.1
CDX89313	Canola	mitochondrion	19.48	8.28

Protein Annotations

EnsemblPlants:CDY57780	EnsemblPlantsGene:GSBRNA2T00022622001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	PFscan:PS51375	ProteinID:CDY57780	ProteinID:CDY57780.1	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI0004EC6C82	UniProt:A0A078J2L1	MapMan:35.1	:	:	:

Description

BnaCnng32430DBnaCnng32430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J2L1]

Coordinates

chrLK033603:-:41150..42937

Molecular Weight (calculated)

64038.8 Da

IEP (calculated)

8.036

GRAVY (calculated)

-0.058

Length

575 amino acids

Sequence
(BLAST)

001: MAEKAQKTLI LLANLIKVPP LKAFSLLNPS NLHGVQHTHE SFSVLLHLLL SGNLLPHAQS LLLQAITRRI HSQSFTPSSL LRYLTQSETS KPNSRLYEVI
101: ISTCIQSQSL DSAVSYFTEM IDKGLVPGWN CFNNLLTFVA GSSSFDEFWA FFNENKGRVV LDVYSFGIAI KACCESGEID KSFHLLAELR ANGFSPNVVI
201: YTTLIDGCCK RGEIEKAKAL FFEIETIGLV ANERTYTVLI HGLFKNGLTK QGFETYEKMK EDGILPNLYT YNCVMNQLCK DGRTKDAFKV FDEMRERGVS
301: CNVVTYNTLI GGLCREMNAS EACRLMEHLK SDGINPNLIT YNTLIDGFCN VGKLGKALSL CRDLKSRGMS MSLVTYNILV SGFCKKGDTS GAAKIVKEME
401: ERGIKPSKVT YTILIDTFAR SDNMERAIQL RTSMESLGLV PDVHTYSVLI HGFCIKGQMN EASRLFRSMV EKKVEPNEVI YNTMILGYCK EGSSYRALRL
501: LREMGDKELA PNVASYSYLV DVLCKEKKLK EAEDLVEKMI GSGMYPSASV CNMISSAKNG SLIAQTNDKS CLNVT

Best Arabidopsis Sequence Match ( AT4G11690.1 )
(BLAST)

001: MAAKSQKTLV LLANLIKFPP LKAFSLLNSP NFHEFQHTHE SISILLRLLL SGNLFSHAQS LLLQVISGKI HSQFFTSSSL LHYLTESETS KTKFRLYEVI
101: INSYVQSQSL NLSISYFNEM VDNGFVPGSN CFNYLLTFVV GSSSFNQWWS FFNENKSKVV LDVYSFGILI KGCCEAGEIE KSFDLLIELT EFGFSPNVVI
201: YTTLIDGCCK KGEIEKAKDL FFEMGKLGLV ANERTYTVLI NGLFKNGVKK QGFEMYEKMQ EDGVFPNLYT YNCVMNQLCK DGRTKDAFQV FDEMRERGVS
301: CNIVTYNTLI GGLCREMKLN EANKVVDQMK SDGINPNLIT YNTLIDGFCG VGKLGKALSL CRDLKSRGLS PSLVTYNILV SGFCRKGDTS GAAKMVKEME
401: ERGIKPSKVT YTILIDTFAR SDNMEKAIQL RLSMEELGLV PDVHTYSVLI HGFCIKGQMN EASRLFKSMV EKNCEPNEVI YNTMILGYCK EGSSYRALKL
501: LKEMEEKELA PNVASYRYMI EVLCKERKSK EAERLVEKMI DSGIDPSTSI LSLISRAKND SHVSSK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g11690 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0D6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.