Factsheet for PGSC0003DMT400058577

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g04770.t01	Wine grape	plastid	59.89	59.68
KRH50360	Soybean	cytosol, extracellular, plastid	54.37	54.86
AT4G11690.1	Thale cress	endoplasmic reticulum	54.19	53.71
KRH51875	Soybean	cytosol	54.37	53.7
KRH02112	Soybean	extracellular, mitochondrion	51.52	53.32
Bra040883.1-P	Field mustard	endoplasmic reticulum	52.23	50.96
CDX86757	Canola	endoplasmic reticulum, extracellular	51.69	50.43
CDY57780	Canola	endoplasmic reticulum	50.62	49.39
KRH51037	Soybean	endoplasmic reticulum, extracellular, plastid	40.82	49.35
Os05t0583950-00	Rice	mitochondrion	33.16	45.37
Zm00001d042911_P001	Maize	mitochondrion, plastid	31.19	42.68
TraesCS3D01G353400.1	Wheat	cytosol	31.19	42.68
TraesCS3A01G359100.1	Wheat	cytosol	31.19	42.68
OQU87837	Sorghum	plastid	31.02	42.44
HORVU3Hr1G086290.19	Barley	plastid	30.66	42.26
GSMUA_Achr6P34120_001	Banana	cytosol	36.72	41.45
PGSC0003DMT400007278	Potato	mitochondrion	28.88	26.78
PGSC0003DMT400034430	Potato	cytosol	22.28	26.04
PGSC0003DMT400027103	Potato	cytosol	18.89	25.92
PGSC0003DMT400066731	Potato	mitochondrion, plastid	27.99	25.4
PGSC0003DMT400024895	Potato	cytosol	18.18	22.27
PGSC0003DMT400066369	Potato	mitochondrion	29.41	21.51
PGSC0003DMT400015722	Potato	cytosol	19.79	20.94
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	22.28	20.46
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	22.28	20.46
PGSC0003DMT400026741	Potato	mitochondrion	25.67	20.11
PGSC0003DMT400078379	Potato	cytosol	24.24	19.65
PGSC0003DMT400058276	Potato	mitochondrion	25.85	19.28
PGSC0003DMT400003372	Potato	mitochondrion	24.24	18.63
PGSC0003DMT400023499	Potato	plastid	20.86	18.6
PGSC0003DMT400043860	Potato	endoplasmic reticulum, golgi	25.13	18.53
PGSC0003DMT400043863	Potato	endoplasmic reticulum, golgi	25.13	18.53
PGSC0003DMT400040701	Potato	mitochondrion	15.51	15.82
PGSC0003DMT400066275	Potato	cytosol	8.38	14.46
PGSC0003DMT400027098	Potato	cytosol	15.15	13.75
PGSC0003DMT400027113	Potato	cytosol, plastid	23.53	13.07

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102603994	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987	GO:GO:0080156
InterPro:IPR002885	InterPro:IPR011990	UniProt:M1C2X0	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041
EnsemblPlantsGene:PGSC0003DMG400022754	PGSC:PGSC0003DMG400022754	EnsemblPlants:PGSC0003DMT400058577	PFscan:PS51375	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000295BF60	RefSeq:XP_006358860.1	SEG:seg	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022754]

Coordinates

chr8:-:53925116..53928232

Molecular Weight (calculated)

62521.9 Da

IEP (calculated)

6.820

GRAVY (calculated)

0.051

Length

561 amino acids

Sequence
(BLAST)

001: MLQTQQGAAV LVSNLLKTPP LKALTLFKSS IEQGFHQTHQ SFSIILDGLL SSNSISVAQS LILQLVSGRI TSPHFTVPSL LHHLTHTHFL NSTPLYEIVI
101: NAHLQSQLIE EGLVFFNEMI DKGLVPSSNT FNSILSSVIK NGSFEKAWLI FEESMGKEFL DMYSFGIVIK GCCEFGDLNG AFEALAKLKQ MGWRPNVVIY
201: TTIIDGCFKY GDAGRAKELF STMSVEGIIP NQYTYSVLLN GFFRQGLKTD GFELYEKMKL DGVFPDIYTY NSLINVYCSD GEVSKAFELF DEMRHNGVVY
301: NVVTYNTLIR GLCQEKRVLE AEKLVDQMKL AGLHPNLITY NTLIDGCCSA GKLEKGLTLF NQIKSYGLTP TSITYNTLIA GFSRAGNLSK VVDFVREMEE
401: RGIFPSKVTY TILIDAFARS NDMEKALEVF SRMHKAGLTV DLCTYGALIH GWCSQGNMKE ASKLFLSMSE YHLQPNDVIC NTMIFGYCKE SSSYRALKLL
501: KEMVENGMIP NGASYCLTIE VLCGDGKWKE AEVLVSGMMK FGLKPSVSSR DLIQKAKNVT T

Best Arabidopsis Sequence Match ( AT4G11690.1 )
(BLAST)

001: MAAKSQKTLV LLANLIKFPP LKAFSLLNSP NFHEFQHTHE SISILLRLLL SGNLFSHAQS LLLQVISGKI HSQFFTSSSL LHYLTESETS KTKFRLYEVI
101: INSYVQSQSL NLSISYFNEM VDNGFVPGSN CFNYLLTFVV GSSSFNQWWS FFNENKSKVV LDVYSFGILI KGCCEAGEIE KSFDLLIELT EFGFSPNVVI
201: YTTLIDGCCK KGEIEKAKDL FFEMGKLGLV ANERTYTVLI NGLFKNGVKK QGFEMYEKMQ EDGVFPNLYT YNCVMNQLCK DGRTKDAFQV FDEMRERGVS
301: CNIVTYNTLI GGLCREMKLN EANKVVDQMK SDGINPNLIT YNTLIDGFCG VGKLGKALSL CRDLKSRGLS PSLVTYNILV SGFCRKGDTS GAAKMVKEME
401: ERGIKPSKVT YTILIDTFAR SDNMEKAIQL RLSMEELGLV PDVHTYSVLI HGFCIKGQMN EASRLFKSMV EKNCEPNEVI YNTMILGYCK EGSSYRALKL
501: LKEMEEKELA PNVASYRYMI EVLCKERKSK EAERLVEKMI DSGIDPSTSI LSLISRAKND SHVSSK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g11690 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0D6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.