Factsheet for PGSC0003DMT400040701

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g010270.1.1	Tomato	mitochondrion	77.27	91.79
AT2G28050.1	Thale cress	cytosol, plastid	33.82	40.26
GSMUA_Achr11P...	Banana	cytosol	22.36	25.05
EER99880	Sorghum	cytosol	19.27	22.18
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	21.64	22.16
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	21.45	21.97
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	20.73	21.88
Os07t0671200-00	Rice	extracellular	21.45	21.42
TraesCS2B01G133900.1	Wheat	plastid	20.36	20.82
TraesCS2A01G114800.1	Wheat	plastid	20.18	20.63
PGSC0003DMT400027098	Potato	cytosol	22.91	20.39
PGSC0003DMT400015722	Potato	cytosol	18.91	19.62
HORVU2Hr1G019920.1	Barley	cytosol	12.91	18.98
TraesCS2D01G115600.1	Wheat	cytosol, plastid	20.18	18.97
PGSC0003DMT400007278	Potato	mitochondrion	20.18	18.35
PGSC0003DMT400034430	Potato	cytosol	15.82	18.12
PGSC0003DMT400066731	Potato	mitochondrion, plastid	20.0	17.8
PGSC0003DMT400027103	Potato	cytosol	11.82	15.89
PGSC0003DMT400023499	Potato	plastid	17.82	15.58
PGSC0003DMT400058577	Potato	plastid	15.82	15.51
PGSC0003DMT400043860	Potato	endoplasmic reticulum, golgi	21.09	15.24
PGSC0003DMT400043863	Potato	endoplasmic reticulum, golgi	21.09	15.24
PGSC0003DMT400003372	Potato	mitochondrion	20.18	15.21
PGSC0003DMT400027113	Potato	cytosol, plastid	26.18	14.26
PGSC0003DMT400058276	Potato	mitochondrion	19.27	14.1
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	15.64	14.08
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	15.64	14.08
PGSC0003DMT400024895	Potato	cytosol	11.64	13.97
PGSC0003DMT400078379	Potato	cytosol	17.27	13.73
HORVU2Hr1G019880.2	Barley	cytosol	8.55	13.06
PGSC0003DMT400066369	Potato	mitochondrion	18.18	13.04
PGSC0003DMT400026741	Potato	mitochondrion	16.18	12.43
PGSC0003DMT400066275	Potato	cytosol	1.45	2.46

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0090617	InterPro:IPR002885
InterPro:IPR011990	UniProt:M1BA96	PFAM:PF01535	PFAM:PF13041	EnsemblPlantsGene:PGSC0003DMG400015738	PGSC:PGSC0003DMG400015738
EnsemblPlants:PGSC0003DMT400040701	PFscan:PS51375	PANTHER:PTHR44149	PANTHER:PTHR44149:SF1	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000294D72C	SEG:seg	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015738]

Coordinates

chr6:+:12030605..12032257

Molecular Weight (calculated)

62554.2 Da

IEP (calculated)

7.204

GRAVY (calculated)

0.157

Length

550 amino acids

Sequence
(BLAST)

001: MSLQKVLQNL RTLKKWQIPN PSLHPRAKIA DTIINTVLSP IVIAPSTLLS NLTPNLILLI LSDPHINTPK CLDFFNFLML NQSFITFKIG VETHLTLVCR
101: LVKEGYFEDA ETLLVLVPNI ETFRYPFTVK AFCFLIINIV PSLMLKELKI FRCPFAVIAS FFENHNVPSK FASKIFNLLL KALSDNGKFN EALEIFMYMK
201: LNAIEINERT CTVHLINLLK CDQIALALVF FYQMVESGIQ VSVFSLTVVV DGLCKSGEIK KARELVEEML SKGVKPNIIT CNTLVDACAR RWNFEEMNNI
301: LALMKRERVD LNVETYKFSV DGFLSSGKID DAERLILEMY VKGFKVDIHL YNLMIKGYCR LGNMERALSL FRQMIEKDIC PNGDTYSVLV KGLCDKGQVS
401: AAKELVDKML GQGVELDGSM FDILIHCYFK AGMIEEAVSI LGLMEKREFI ADTSVYELII DGLLKLDRTE EAISWLTPLI KRGVSRQKLA TIPLADYLRN
501: SVSEKLVHKR KENENSFKTT FYSDTINLQH EDAHSAEMTN ISAVINEYIK

Best Arabidopsis Sequence Match ( AT2G28050.1 )
(BLAST)

001: MTPQCFLKTL KTAKQTYTFS IYKLLLNSSS INQTLASPET PLSDLNLSTL RRILSDPDIK SWKCISLFNF ILENPSLFSF QPDLRTHLSL TFRVLSERRF
101: SYAKELLKPV AIDDILRYPF NVIVSSVIDE CGCEKKVVGR FFNSMIMVYS DNGKFSEVVE VFEYMKNNEV KIDEKTCTLH LLNLKRCDQM ELARDFFSLM
201: VESGIDVVTV YSLTVVVTVL CCNGEITRAR ELVEEMGLVK GVKANIVTFK SMIGCCVKRW DFEELDLVLK LMEKESVMLD LDSYKVLIDG FTSYGKVEEA
301: ERLVLMMHDK KLRVESYLYN LIMNGYSRFG LVEKVIELYS EMSSRGVTPN KDTYWVLMNG LCKAGKVCEA MSFLNELRVN EFEIDEEMYS TLSEECYRVG
401: MIDKSLEVVA EMIRDGFIPG ATICERLADS LFEVNRKEAQ MLITIVVKCG IKPKSCSQYG LK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g28050 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUU7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.