Factsheet for PGSC0003DMT400026741

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g068890.2.1	Tomato	mitochondrion	97.21	97.21
VIT_01s0011g01910.t01	Wine grape	mitochondrion	62.15	62.85
CDY51888	Canola	cytosol, mitochondrion, plastid	42.88	62.15
Bra013432.1-P	Field mustard	cytosol	42.46	61.41
CDX78962	Canola	cytosol	42.46	61.41
KRH40170	Soybean	mitochondrion	57.4	59.31
AT4G19890.1	Thale cress	plastid	56.01	57.2
GSMUA_Achr1P12220_001	Banana	mitochondrion	49.72	51.15
TraesCS7A01G134800.1	Wheat	mitochondrion	43.85	46.73
TraesCS7B01G036200.1	Wheat	mitochondrion	43.44	46.56
Os11t0607100-01	Rice	mitochondrion	43.58	46.5
TraesCS7D01G134400.2	Wheat	mitochondrion	43.44	46.42
Zm00001d048880_P001	Maize	mitochondrion	43.72	46.3
HORVU7Hr1G028150.1	Barley	mitochondrion	31.42	44.55
OQU83816	Sorghum	mitochondrion	27.23	43.92
PGSC0003DMT400027103	Potato	cytosol	15.92	27.87
PGSC0003DMT400034430	Potato	cytosol	17.46	26.04
PGSC0003DMT400058577	Potato	plastid	20.11	25.67
PGSC0003DMT400024895	Potato	cytosol	15.92	24.89
PGSC0003DMT400066731	Potato	mitochondrion, plastid	20.67	23.95
PGSC0003DMT400058276	Potato	mitochondrion	24.72	23.54
PGSC0003DMT400043860	Potato	endoplasmic reticulum, golgi	24.58	23.13
PGSC0003DMT400043863	Potato	endoplasmic reticulum, golgi	24.58	23.13
PGSC0003DMT400066369	Potato	mitochondrion	24.44	22.82
PGSC0003DMT400015807	Potato	endoplasmic reticulum, extracellular	19.27	22.59
PGSC0003DMT400015805	Potato	endoplasmic reticulum, extracellular	19.27	22.59
PGSC0003DMT400007278	Potato	mitochondrion	18.72	22.15
PGSC0003DMT400078379	Potato	cytosol	21.09	21.82
PGSC0003DMT400023499	Potato	plastid	18.3	20.83
PGSC0003DMT400015722	Potato	cytosol	15.22	20.57
PGSC0003DMT400003372	Potato	mitochondrion	20.39	20.0
PGSC0003DMT400066275	Potato	cytosol	8.24	18.15
PGSC0003DMT400040701	Potato	mitochondrion	12.43	16.18
PGSC0003DMT400027098	Potato	cytosol	13.13	15.21
PGSC0003DMT400027113	Potato	cytosol, plastid	20.25	14.36

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102598244	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	UniProt:M1ANN5	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041
EnsemblPlantsGene:PGSC0003DMG400010332	PGSC:PGSC0003DMG400010332	EnsemblPlants:PGSC0003DMT400026741	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF325
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000294D2C6	RefSeq:XP_006362578.1
RefSeq:XP_006362579.1	RefSeq:XP_006362580.1	:	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010332]

Coordinates

chr2:+:27848945..27854556

Molecular Weight (calculated)

81465.6 Da

IEP (calculated)

8.124

GRAVY (calculated)

-0.023

Length

716 amino acids

Sequence
(BLAST)

001: MISFTFHRLY RLHHFTASTT LLNGLLFSHP YHFFNFNSNP FWRYTQFNSF TTNPLSSDFD SVVKRVCSLV SESYCKVQEN THFKSRHPKL KLPIDSEYLT
101: QEQAITVVAS LADEGGSMLA LSFFYWAIGY VKFRHFMRLY IVLAIYLIKN GNFERTHEVM HFMLRNFCEV GMLKEAVDMV FEMQNQGLVL NAGSLNSVVS
201: VATEMGHVEM AEKVFGEMCD RGVCPDSFCF ESMVVAYCRM GRVVEADRWL SAMLERGFLV DNATCTLIMS VFCDKGSVNR VLWIFNKLIE LGLAPNVINY
301: TCLINGLCKK GIIKHAFELL EEMVRKGLKP NVFTHTVLID GLCKKGWMDK AFRLFLKLVK SDNYKPNVHT YTAMIAGYCK QEKLNRAEML LSRMQEQELV
401: PNANTYTALI DGYCKVGNFD VAYKLLRVMD EKGLAPSIFT YNAVIDGLCK KGRVQEAYQM LKKGMQIEIS PDLVTYTILM SQSCKLGDNG QAFALFSKMV
501: KAGISPDMHT YTTLIAALCR QKKMKDSEKL FDDAVILGLI PTKETCTSMI CGYCRDKNVA MAKKYFQRMG EYGCVPDSLT YGALISGLCK ESKLDEARDL
601: YNSMVDKGIP PCEVTRLTVA YEYCKNNEPT IAMGLLDRLE KKLWIRTVST LVRKLCSEKN VDVAALFFHK LLDKQQSVDR VTLAAFMSAC YESNNYDLVS
701: SMNERITKDF GESTVE

Best Arabidopsis Sequence Match ( AT4G19890.1 )
(BLAST)

001: MLSLLLPKSN RFLLRTFEIP NSLCSLFFFR LISSDHESSD LSLPSSPSSS PSQCLVKSVC SLVCTSYLRQ NHVVSSPHRV NLDFDANSLT HEQAITVVAS
101: LASESGSMVA LCFFYWAVGF EKFRHFMRLY LVTADSLLAN GNLQKAHEVM RCMLRNFSEI GRLNEAVGMV MDMQNQGLTP SSITMNCVLE IAVELGLIEY
201: AENVFDEMSV RGVVPDSSSY KLMVIGCFRD GKIQEADRWL TGMIQRGFIP DNATCTLILT ALCENGLVNR AIWYFRKMID LGFKPNLINF TSLIDGLCKK
301: GSIKQAFEML EEMVRNGWKP NVYTHTALID GLCKRGWTEK AFRLFLKLVR SDTYKPNVHT YTSMIGGYCK EDKLNRAEML FSRMKEQGLF PNVNTYTTLI
401: NGHCKAGSFG RAYELMNLMG DEGFMPNIYT YNAAIDSLCK KSRAPEAYEL LNKAFSCGLE ADGVTYTILI QEQCKQNDIN QALAFFCRMN KTGFEADMRL
501: NNILIAAFCR QKKMKESERL FQLVVSLGLI PTKETYTSMI SCYCKEGDID LALKYFHNMK RHGCVPDSFT YGSLISGLCK KSMVDEACKL YEAMIDRGLS
601: PPEVTRVTLA YEYCKRNDSA NAMILLEPLD KKLWIRTVRT LVRKLCSEKK VGVAALFFQK LLEKDSSADR VTLAAFTTAC SESGKNNLVT DLTERISRGV
701: G

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g19890 [Source:UniProtKB/Swiss-Prot;Acc:P0C8Q3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.