Factsheet for Bra013432.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78962	Canola	cytosol	99.8	99.8
AT4G19890.1	Thale cress	plastid	92.12	65.05
VIT_01s0011g01910.t01	Wine grape	mitochondrion	66.67	46.61
KRH40170	Soybean	mitochondrion	65.25	46.61
Solyc02g068890.2.1	Tomato	mitochondrion	61.82	42.74
PGSC0003DMT400026741	Potato	mitochondrion	61.41	42.46
GSMUA_Achr1P12220_001	Banana	mitochondrion	56.97	40.52
Os11t0607100-01	Rice	mitochondrion	54.34	40.09
TraesCS7D01G134400.2	Wheat	mitochondrion	53.54	39.55
Zm00001d048880_P001	Maize	mitochondrion	53.94	39.5
TraesCS7B01G036200.1	Wheat	mitochondrion	53.13	39.37
TraesCS7A01G134800.1	Wheat	mitochondrion	53.33	39.29
HORVU7Hr1G028150.1	Barley	mitochondrion	36.77	36.04
OQU83816	Sorghum	mitochondrion	32.32	36.04
Bra015447.1-P	Field mustard	cytosol	23.84	27.06
Bra002000.1-P	Field mustard	cytosol	15.76	25.74
Bra040883.1-P	Field mustard	endoplasmic reticulum	26.87	23.13
Bra024554.1-P	Field mustard	cytosol	15.35	22.49
Bra017434.1-P	Field mustard	cytosol, plastid	24.04	21.36
Bra022891.1-P	Field mustard	plastid	24.04	19.38
Bra024831.1-P	Field mustard	mitochondrion	28.28	19.13
Bra025651.1-P	Field mustard	mitochondrion	28.48	18.93
Bra024552.1-P	Field mustard	cytosol	9.49	18.65
Bra019985.1-P	Field mustard	cytosol	21.41	17.32
Bra015229.1-P	Field mustard	mitochondrion	22.02	17.22
Bra035931.1-P	Field mustard	mitochondrion	22.22	17.0
Bra028204.1-P	Field mustard	cytosol	19.8	16.53
Bra005695.1-P	Field mustard	mitochondrion	23.23	15.52
Bra038853.1-P	Field mustard	mitochondrion	21.41	15.23
Bra020001.1-P	Field mustard	mitochondrion	18.18	15.0
Bra025578.1-P	Field mustard	plastid	17.37	13.8
Bra026410.1-P	Field mustard	mitochondrion	18.18	6.82

Protein Annotations

EnsemblPlants:Bra013432.1	EnsemblPlants:Bra013432.1-P	EnsemblPlantsGene:Bra013432	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF325	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
UniParc:UPI0002546824	UniProt:M4DAC2	MapMan:35.1	:	:	:

Description

AT4G19900 (E=2e-272) | glycosyl transferase-related

Coordinates

chrA01:-:5620415..5621902

Molecular Weight (calculated)

55844.1 Da

IEP (calculated)

8.852

GRAVY (calculated)

-0.181

Length

495 amino acids

Sequence
(BLAST)

001: MSVRGVRPDS TSFKLMVIGC FRDGKIQEAD RWLNGMIQRG FVPDNATCTL ILSALCENGL VNRAIWYFRK MVDLGLKPNL INFTALIDGL CKKGSIKQGF
101: EMLEEMVGVG WKPNVYTHTA LIDGLCKRGW TERAFRLFLK LVRSDCYKPN VHTYTSMIGG YCKEDKLNRA EMLFSRMKEQ GLFPNVNTYT TLIDGHCKAG
201: NFDRAYELMN LMGDEGFRPN IYTYNAVVDS LCKKSRASEA YELLNKAFSC GLEADGVTYT ILIQEQCKQS DIKQALAFFC RMNKTGFEAD MRLNNILIAA
301: FCRQKKMKES EKLFGYVVSL GLVPTKETYT SMISGYCKEG DIDLALKYFN NMKRHGCVPD SFTYGSLISG LCKKSMVDQA CKLYEAMIDK GLSPSEVTRV
401: TLAYEYCKRN DSANAMMLLE PLDKRLWIRT VRTLVRKLCS EKKVGVAALF YQKLLEKDGS SLDRVTLAAF TTACSESGKN NLVTDLTERV SRGVG

Best Arabidopsis Sequence Match ( AT4G19890.1 )
(BLAST)

001: MLSLLLPKSN RFLLRTFEIP NSLCSLFFFR LISSDHESSD LSLPSSPSSS PSQCLVKSVC SLVCTSYLRQ NHVVSSPHRV NLDFDANSLT HEQAITVVAS
101: LASESGSMVA LCFFYWAVGF EKFRHFMRLY LVTADSLLAN GNLQKAHEVM RCMLRNFSEI GRLNEAVGMV MDMQNQGLTP SSITMNCVLE IAVELGLIEY
201: AENVFDEMSV RGVVPDSSSY KLMVIGCFRD GKIQEADRWL TGMIQRGFIP DNATCTLILT ALCENGLVNR AIWYFRKMID LGFKPNLINF TSLIDGLCKK
301: GSIKQAFEML EEMVRNGWKP NVYTHTALID GLCKRGWTEK AFRLFLKLVR SDTYKPNVHT YTSMIGGYCK EDKLNRAEML FSRMKEQGLF PNVNTYTTLI
401: NGHCKAGSFG RAYELMNLMG DEGFMPNIYT YNAAIDSLCK KSRAPEAYEL LNKAFSCGLE ADGVTYTILI QEQCKQNDIN QALAFFCRMN KTGFEADMRL
501: NNILIAAFCR QKKMKESERL FQLVVSLGLI PTKETYTSMI SCYCKEGDID LALKYFHNMK RHGCVPDSFT YGSLISGLCK KSMVDEACKL YEAMIDRGLS
601: PPEVTRVTLA YEYCKRNDSA NAMILLEPLD KKLWIRTVRT LVRKLCSEKK VGVAALFFQK LLEKDSSADR VTLAAFTTAC SESGKNNLVT DLTERISRGV
701: G

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g19890 [Source:UniProtKB/Swiss-Prot;Acc:P0C8Q3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.