Factsheet for Solyc02g068890.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026741	Potato	mitochondrion	97.21	97.21
VIT_01s0011g01910.t01	Wine grape	mitochondrion	61.87	62.57
CDY51888	Canola	cytosol, mitochondrion, plastid	43.02	62.35
Bra013432.1-P	Field mustard	cytosol	42.74	61.82
CDX78962	Canola	cytosol	42.74	61.82
KRH40170	Soybean	mitochondrion	57.96	59.88
AT4G19890.1	Thale cress	plastid	56.15	57.35
GSMUA_Achr1P12220_001	Banana	mitochondrion	49.3	50.72
Os11t0607100-01	Rice	mitochondrion	43.58	46.5
TraesCS7A01G134800.1	Wheat	mitochondrion	43.44	46.28
Zm00001d048880_P001	Maize	mitochondrion	43.58	46.15
TraesCS7B01G036200.1	Wheat	mitochondrion	43.02	46.11
TraesCS7D01G134400.2	Wheat	mitochondrion	43.02	45.97
HORVU7Hr1G028150.1	Barley	mitochondrion	31.56	44.75
OQU83816	Sorghum	mitochondrion	27.51	44.37
Solyc11g011410.1.1	Tomato	cytosol	17.88	26.67
Solyc10g084080.1.1	Tomato	cytosol, extracellular	17.88	24.95
Solyc01g109060.2.1	Tomato	mitochondrion	21.09	24.43
Solyc01g108410.1.1	Tomato	mitochondrion	24.16	22.56
Solyc02g021280.1.1	Tomato	endoplasmic reticulum	23.88	22.53
Solyc01g100450.1.1	Tomato	mitochondrion	18.99	22.48
Solyc04g050550.1.1	Tomato	cytosol	18.44	22.45
Solyc01g111470.2.1	Tomato	plastid	21.93	21.1
Solyc07g047620.1.1	Tomato	cytosol, mitochondrion	15.36	20.75
Solyc05g008560.1.1	Tomato	mitochondrion	21.37	20.29
Solyc03g007390.2.1	Tomato	plastid	17.6	19.84
Solyc06g010270.1.1	Tomato	mitochondrion	11.03	17.06
Solyc06g069700.2.1	Tomato	plastid	18.44	16.38
Solyc10g084090.1.1	Tomato	cytosol	21.51	11.52

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4B7M1
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF325
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	EnsemblPlantsGene:Solyc02g068890.2	EnsemblPlants:Solyc02g068890.2.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0002767CED	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:+:38771876..38774272

Molecular Weight (calculated)

81263.5 Da

IEP (calculated)

8.271

GRAVY (calculated)

-0.014

Length

716 amino acids

Sequence
(BLAST)

001: MISFAFHRLY RLHHFTASTT LLNGLLFSYP HHFFNFNSNP FWRYTQFHSF TTNPLSSDFD SVVRRVCSLV SESYCKVQEN THFKSRHPKL KLPIDSECLT
101: QEQAITVVAS LADEGGSMLA LSFFYWAIGY VKFRHFMRLY IVLAIYLIKN GNFERTHEVM HCMLRNFCEV GMLKEAVDMV FEMQNQGLVL NAGSLNSVVS
201: VVTEMGHVEM AEKVFGEMCD RGVCPDSFCF ESMVVAYCRM GRVVEADRWL SAMLERGFLV DNATCTLILS VFCEKGSINR VLWIFNKLIE LGLAPNVINY
301: TCLINGLCKK GIIKHAFELL EEMVRKGLKP NVFTHTALID GLCKKGWMDK AFRLFLKLVK SDNYKPNVHT YTAMIAGYCK QEKLNRAEML LSRMQEQELV
401: PNANTYTALI DGYCKVGNFD VAYKLLRVMD EKGLAPSIFT YNAVIDGLCK KGRVQEAYQM LKKGMQIGIS PDLVTYTILM SQSCKLGDNG QAFALFSKMV
501: KAGIGPDMHT YTTLIAALCR QKKMKDSEKL FDDAVILGLI PTKETCTSMI CGYCRDKNVA MAKKYFQRMG EYGCVPDSLT YGALISGLCK ESKLDEARDL
601: YNSMVDKGIP PCEVTRLTVA YEYCKNNEPT ITMGLLDKLE KKLWVRTVST LVRKLCSEKN VNVAALFFHK LLDKQQSVDR VTLAAFMSAC YESNKYDLVS
701: SMNERITKDF GESTAE

Best Arabidopsis Sequence Match ( AT4G19890.1 )
(BLAST)

001: MLSLLLPKSN RFLLRTFEIP NSLCSLFFFR LISSDHESSD LSLPSSPSSS PSQCLVKSVC SLVCTSYLRQ NHVVSSPHRV NLDFDANSLT HEQAITVVAS
101: LASESGSMVA LCFFYWAVGF EKFRHFMRLY LVTADSLLAN GNLQKAHEVM RCMLRNFSEI GRLNEAVGMV MDMQNQGLTP SSITMNCVLE IAVELGLIEY
201: AENVFDEMSV RGVVPDSSSY KLMVIGCFRD GKIQEADRWL TGMIQRGFIP DNATCTLILT ALCENGLVNR AIWYFRKMID LGFKPNLINF TSLIDGLCKK
301: GSIKQAFEML EEMVRNGWKP NVYTHTALID GLCKRGWTEK AFRLFLKLVR SDTYKPNVHT YTSMIGGYCK EDKLNRAEML FSRMKEQGLF PNVNTYTTLI
401: NGHCKAGSFG RAYELMNLMG DEGFMPNIYT YNAAIDSLCK KSRAPEAYEL LNKAFSCGLE ADGVTYTILI QEQCKQNDIN QALAFFCRMN KTGFEADMRL
501: NNILIAAFCR QKKMKESERL FQLVVSLGLI PTKETYTSMI SCYCKEGDID LALKYFHNMK RHGCVPDSFT YGSLISGLCK KSMVDEACKL YEAMIDRGLS
601: PPEVTRVTLA YEYCKRNDSA NAMILLEPLD KKLWIRTVRT LVRKLCSEKK VGVAALFFQK LLEKDSSADR VTLAAFTTAC SESGKNNLVT DLTERISRGV
701: G

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g19890 [Source:UniProtKB/Swiss-Prot;Acc:P0C8Q3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.