Factsheet for Solyc01g109060.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066731	Potato	mitochondrion, plastid	94.66	94.66
VIT_12s0055g00970.t01	Wine grape	plastid	64.08	62.46
KRH24548	Soybean	mitochondrion	59.22	58.75
GSMUA_Achr8P16100_001	Banana	cytosol	25.4	57.51
KRH29553	Soybean	mitochondrion	38.84	54.79
AT2G15630.1	Thale cress	mitochondrion	51.29	50.56
CDY36644	Canola	mitochondrion	51.62	50.39
Bra015229.1-P	Field mustard	mitochondrion	51.46	50.24
CDX71231	Canola	mitochondrion	51.13	50.08
OQU81794	Sorghum	mitochondrion, peroxisome	31.72	48.64
Os04t0477200-01	Rice	endoplasmic reticulum	34.14	46.37
HORVU2Hr1G082620.1	Barley	plastid	35.6	43.48
TraesCS2D01G336100.1	Wheat	plastid	36.57	43.13
Zm00001d003294_P001	Maize	plastid	36.25	42.75
TraesCS2A01G326700.1	Wheat	plastid	36.08	42.56
TraesCS2B01G355200.1	Wheat	plastid	36.08	42.56
Solyc11g011410.1.1	Tomato	cytosol	22.65	29.17
Solyc01g100450.1.1	Tomato	mitochondrion	24.6	25.12
Solyc07g047620.1.1	Tomato	cytosol, mitochondrion	20.87	24.34
Solyc01g108410.1.1	Tomato	mitochondrion	29.61	23.86
Solyc04g050550.1.1	Tomato	cytosol	22.33	23.47
Solyc10g084080.1.1	Tomato	cytosol, extracellular	18.93	22.81
Solyc02g021280.1.1	Tomato	endoplasmic reticulum	27.51	22.4
Solyc05g008560.1.1	Tomato	mitochondrion	27.18	22.28
Solyc03g007390.2.1	Tomato	plastid	22.82	22.2
Solyc01g111470.2.1	Tomato	plastid	26.38	21.91
Solyc02g068890.2.1	Tomato	mitochondrion	24.43	21.09
Solyc06g010270.1.1	Tomato	mitochondrion	15.21	20.3
Solyc06g069700.2.1	Tomato	plastid	24.11	18.49
Solyc10g084090.1.1	Tomato	cytosol	25.4	11.74

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4B3C0
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF918
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	EnsemblPlantsGene:Solyc01g109060.2	EnsemblPlants:Solyc01g109060.2.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0002768625	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:96112969..96115249

Molecular Weight (calculated)

69466.2 Da

IEP (calculated)

8.187

GRAVY (calculated)

-0.049

Length

618 amino acids

Sequence
(BLAST)

001: MRSVELLRSL SLRRFSTLGL SKSTSPTIPI TAEVLRESVT SSQWHFIKHV TGELNPTLIS ATLPELRSSP DRVLTFIENL GPDCLDISCY CLAISILSRL
101: PSPKQATHLL KQVISSRFAS PNEIFYGLVS AREKLVVKSS IVLDLLVRAY CELKKGEDAL KCFYLMKQKG ILPKVETCND LLSLFLKLNR THLAWIVYAE
201: MFRMKMSSTV CTFNIMINVL CREGKLKKAK EFIEHMQCSG VKPNLISFNT VIHGYCLRGD IEGANKIFEA MTAKGIEPDS YTFNSLVRGM VKEGREKEVS
301: SLLEKMKPFG LIPTAVTYNT LIDSCCSKGD LEKAFFYRDE MVKIGIVPSV ATYNLLIHAL FLDGRMVETD DLLKDMSEKR VLPDGITYNI LINGYCRVGN
401: AKKAFKFYDE LLSRGLQPTI VTYTSLIKVL GKRNRMKEAD DLVVEILRKG IFPDLIMFNA LIDGHCANDN VERAFDTLNG MNKMNVQPDE VTYNTLMQGY
501: CKKGKVEEAC MLLEEMKGRG IKPDHISYNT LISGYSRRGD MHDAFRIRDD MLSAGFNPTL LTYNALIQGL CKKQEGVLAE ELLKEMVSKG ITPDDSTYLA
601: LIEGIGDVDS FLGRKDIS

Best Arabidopsis Sequence Match ( AT2G15630.1 )
(BLAST)

001: MRRFTVPCIL RHRISILSGA GYSPAAARLS SLAQTSTPES VLPPITSEIL LESIRSSQWH IVEHVADKLT PSLVSTTLLS LVKTPNLAFN FVNHIDLYRL
101: DFQTQCLAIA VISKLSSPKP VTQLLKEVVT SRKNSIRNLF DELVLAHDRL ETKSTILFDL LVRCCCQLRM VDEAIECFYL MKEKGFYPKT ETCNHILTLL
201: SRLNRIENAW VFYADMYRME IKSNVYTFNI MINVLCKEGK LKKAKGFLGI MEVFGIKPTI VTYNTLVQGF SLRGRIEGAR LIISEMKSKG FQPDMQTYNP
301: ILSWMCNEGR ASEVLREMKE IGLVPDSVSY NILIRGCSNN GDLEMAFAYR DEMVKQGMVP TFYTYNTLIH GLFMENKIEA AEILIREIRE KGIVLDSVTY
401: NILINGYCQH GDAKKAFALH DEMMTDGIQP TQFTYTSLIY VLCRKNKTRE ADELFEKVVG KGMKPDLVMM NTLMDGHCAI GNMDRAFSLL KEMDMMSINP
501: DDVTYNCLMR GLCGEGKFEE ARELMGEMKR RGIKPDHISY NTLISGYSKK GDTKHAFMVR DEMLSLGFNP TLLTYNALLK GLSKNQEGEL AEELLREMKS
601: EGIVPNDSSF CSVIEAMSNL DAKKSDS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.