Factsheet for Solyc04g050550.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0083g00550.t01	Wine grape	cytosol	62.59	62.37
KRH20741	Soybean	cytosol	58.33	58.43
KRH13392	Soybean	cytosol	58.16	58.26
AT5G38730.1	Thale cress	cytosol	55.95	55.2
Bra028204.1-P	Field mustard	cytosol	55.1	54.64
CDX74507	Canola	cytosol	55.1	54.64
CDY67116	Canola	cytosol	54.93	54.47
GSMUA_Achr1P17710_001	Banana	cytosol	51.53	49.59
Os02t0827900-03	Rice	plastid	44.22	44.83
Zm00001d018528_P001	Maize	cytosol	43.54	44.06
EES07796	Sorghum	cytosol, endoplasmic reticulum, extracellular	44.22	43.33
TraesCS6A01G371200.1	Wheat	plastid	43.54	42.88
TraesCS6D01G355100.1	Wheat	plastid	43.37	42.71
TraesCS6B01G408200.1	Wheat	plastid	42.69	42.04
HORVU6Hr1G087430.7	Barley	cytosol	42.69	40.68
Solyc11g011410.1.1	Tomato	cytosol	22.79	27.92
Solyc07g047620.1.1	Tomato	cytosol, mitochondrion	23.13	25.66
Solyc01g109060.2.1	Tomato	mitochondrion	23.47	22.33
Solyc10g084080.1.1	Tomato	cytosol, extracellular	19.39	22.22
Solyc01g100450.1.1	Tomato	mitochondrion	22.79	22.15
Solyc03g007390.2.1	Tomato	plastid	22.96	21.26
Solyc01g108410.1.1	Tomato	mitochondrion	26.36	20.21
Solyc01g111470.2.1	Tomato	plastid	25.17	19.89
Solyc05g008560.1.1	Tomato	mitochondrion	24.15	18.83
Solyc02g021280.1.1	Tomato	endoplasmic reticulum	24.15	18.71
Solyc02g068890.2.1	Tomato	mitochondrion	22.45	18.44
Solyc06g010270.1.1	Tomato	mitochondrion	13.78	17.49
Solyc06g069700.2.1	Tomato	plastid	22.11	16.13
Solyc10g084090.1.1	Tomato	cytosol	25.34	11.14

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885
InterPro:IPR011990	UniProt:K4BS24	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF279	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:Solyc04g050550.1	EnsemblPlants:Solyc04g050550.1.1	TIGRFAMs:TIGR00756
TMHMM:TMhelix	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002766DAD	:	:	:

Description

No Description!

Coordinates

chr4:+:47581621..47583387

Molecular Weight (calculated)

67024.8 Da

IEP (calculated)

8.960

GRAVY (calculated)

-0.105

Length

588 amino acids

Sequence
(BLAST)

001: MANLIRANLD NEMVKAVAAV VFKGHWDNLL KPKIGSSVTS TTIRQALLHI SQYYFSLSWS FFQWAESVPS HKHSLQSSWT MMYILTKQKH FKTAQDMLQK
101: VAVKNFLSSP TVLNALVRSN MNNDVNSHLL SWLVIFYANS KLPHDAIQVF EHMRVCKLMP HTHACSTLLN SLVKDGLTDT LWKIYKKMQK IGVLPNIYIY
201: NVLMHACCKS GDVERADDLL REMEFKATLP DLYTYNTLIS LYCKKGMHYE ALCVQDRMER AGVCPDIVTY NSLIYSYCRE GRMREAMRLF KEIKGSTTNL
301: VTYTTLIDGY CRANNVAEAL RLKGAMETKG LYPGVVTYNS ILRKLCEQGQ MKDANILLNE MNEKKVIPDN VTCNTLINGY CKIGDMESAL KVKNKMLEGG
401: LKPDRFTYNA MIHGFCKVKD TDGAKEVLFD MVRVGLSPSY CSYSWLVDAY CHLNNEVAVV SLPDEFAKGG HLVDVSFYRA IIRRLCRRGK IDGAEKVFHI
501: MQTKGVLGDS LIYATLAYAF FMAGKVDAAS YLLDDMYKRR LMITLKMYKS FNASYSDENT LLNMFWSNVV QRGLISRTVY DEIQSCNS

Best Arabidopsis Sequence Match ( AT5G38730.1 )
(BLAST)

001: MVNLLSANRE ALIAQSICAT VLKGNWKNIL KHKVDSGLLK SAITTQVISE LSLFSGYGGP SLSWSFFIWT DSLPSSKHSL QSSWKMILIL TKHKHFKTAH
101: QLLDKLAQRE LLSSPLVLRS LVGGVSEDPE DVSHVFSWLM IYYAKAGMIN DSIVVFEQIR SCGLKPHLQA CTVLLNSLVK QRLTDTVWKI FKKMVKLGVV
201: ANIHVYNVLV HACSKSGDPE KAEKLLSEME EKGVFPDIFT YNTLISVYCK KSMHFEALSV QDRMERSGVA PNIVTYNSFI HGFSREGRMR EATRLFREIK
301: DDVTANHVTY TTLIDGYCRM NDIDEALRLR EVMESRGFSP GVVTYNSILR KLCEDGRIRE ANRLLTEMSG KKIEPDNITC NTLINAYCKI EDMVSAVKVK
401: KKMIESGLKL DMYSYKALIH GFCKVLELEN AKEELFSMIE KGFSPGYATY SWLVDGFYNQ NKQDEITKLL EEFEKRGLCA DVALYRGLIR RICKLEQVDY
501: AKVLFESMEK KGLVGDSVIF TTMAYAYWRT GKVTEASALF DVMYNRRLMV NLKLYKSISA SYAGDNDVLR FFWSHVGDRC LISKSILREM NRSEVL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g38730 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKR3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.