Factsheet for HORVU6Hr1G087430.7

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G371200.1	Wheat	plastid	91.73	94.81
TraesCS6B01G408200.1	Wheat	plastid	90.11	93.13
TraesCS6D01G355100.1	Wheat	plastid	89.3	92.29
Os02t0827900-03	Rice	plastid	73.1	77.76
EES07796	Sorghum	cytosol, endoplasmic reticulum, extracellular	73.26	75.33
Zm00001d018528_P001	Maize	cytosol	70.83	75.22
VIT_14s0083g00550.t01	Wine grape	cytosol	43.76	45.76
GSMUA_Achr1P17710_001	Banana	cytosol	44.41	44.84
CDY67116	Canola	cytosol	42.79	44.52
Bra028204.1-P	Field mustard	cytosol	42.46	44.18
CDX74507	Canola	cytosol	42.46	44.18
Solyc04g050550.1.1	Tomato	cytosol	40.68	42.69
AT5G38730.1	Thale cress	cytosol	40.84	42.28
KRH20741	Soybean	cytosol	38.74	40.72
KRH13392	Soybean	cytosol	37.93	39.86
HORVU6Hr1G084410.1	Barley	cytosol, mitochondrion	10.7	30.14
HORVU1Hr1G093590.2	Barley	cytosol	11.02	28.57
HORVU2Hr1G080360.2	Barley	mitochondrion	21.23	25.59
HORVU2Hr1G082620.1	Barley	plastid	20.42	24.9
HORVU2Hr1G080860.1	Barley	plastid	25.12	24.53
HORVU1Hr1G042440.2	Barley	mitochondrion	22.69	24.43
HORVU3Hr1G086290.19	Barley	plastid	16.05	24.32
HORVU7Hr1G028150.1	Barley	mitochondrion	18.8	22.97
HORVU5Hr1G009510.3	Barley	cytosol	21.39	22.37
HORVU2Hr1G019920.1	Barley	cytosol	13.29	21.93
HORVU5Hr1G042300.1	Barley	plastid	23.34	20.2
HORVU7Hr1G023200.23	Barley	cytosol	22.53	20.03
HORVU4Hr1G074200.9	Barley	mitochondrion	21.39	19.35
HORVU7Hr1G087760.14	Barley	cytosol, mitochondrion	21.56	19.25
HORVU5Hr1G066340.2	Barley	mitochondrion	18.8	18.71
HORVU2Hr1G046710.2	Barley	cytosol, plastid	22.85	18.22
HORVU2Hr1G019880.2	Barley	cytosol	10.53	18.06
HORVU0Hr1G013090.3	Barley	cytosol, plastid	16.86	17.96
HORVU4Hr1G070310.1	Barley	plastid	23.5	17.34

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A287V2X5	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:HORVU6Hr1G087430	EnsemblPlants:HORVU6Hr1G087430.7	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFAM:PF17177	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF279	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000B47FDDB	SEG:seg

Description

No Description!

Coordinates

chrchr6H:-:564074028..564076653

Molecular Weight (calculated)

67502.6 Da

IEP (calculated)

9.447

GRAVY (calculated)

-0.082

Length

617 amino acids

Sequence
(BLAST)

001: SRVELPKNQK SPVHFPRGGP MPPHAGVDLP RAICAAVIKC SYRRHAHLLA ADPTLLAAVL GRLSPLPSAA LSFFRALPPP HPLDASLALV RLLAAHPRHH
101: PVARTLLRDL SLRHPLSSPL LLPSLLAEPH LPSWLLLALA QGGRAGDAVR VFDHMRAEGL APDAHACTAL LTSLARARMT ATARRVFDGM GRAGVAMNTH
201: VYNAMLHVCL KAGDAARAEA LMTRMDATGV PLDLFSFNTA IALYVRKGMQ YEAMCVRDRM ANDGVEADIV TWNTVIHGMC KEGRMKEASQ LHRDMVAAGI
301: EPDTVTYTTL VDGYCRAGDV GEAMNLRAVM EARGMLPGVA AYNAIIRKLC EDGKMKEVNG LLSEMDERKV QADHVTCNTL INSYSKKGDM PSACKVKTRM
401: MESGLQLDQF TYKALIHGFS KAKQLDEAKE ALFEMMGAGF SPNYSVFSWL VDGFYKRNNA DAVLLIPDEL MKRGLPPDKS VYRSLIRRLC KKRLVDLAQK
501: VLHQMQGKGL EADCLVYASL AYAQLTAGKL AAASDTLNDM AKKQLSVTPQ IYNCLCTSYG DEKQTLNMFW VHAIERGLIG KSVYKLMHQA RLKSLNPAVE
601: NEGHAPVSRP SLPASAK

Best Arabidopsis Sequence Match ( AT5G38730.1 )
(BLAST)

001: MVNLLSANRE ALIAQSICAT VLKGNWKNIL KHKVDSGLLK SAITTQVISE LSLFSGYGGP SLSWSFFIWT DSLPSSKHSL QSSWKMILIL TKHKHFKTAH
101: QLLDKLAQRE LLSSPLVLRS LVGGVSEDPE DVSHVFSWLM IYYAKAGMIN DSIVVFEQIR SCGLKPHLQA CTVLLNSLVK QRLTDTVWKI FKKMVKLGVV
201: ANIHVYNVLV HACSKSGDPE KAEKLLSEME EKGVFPDIFT YNTLISVYCK KSMHFEALSV QDRMERSGVA PNIVTYNSFI HGFSREGRMR EATRLFREIK
301: DDVTANHVTY TTLIDGYCRM NDIDEALRLR EVMESRGFSP GVVTYNSILR KLCEDGRIRE ANRLLTEMSG KKIEPDNITC NTLINAYCKI EDMVSAVKVK
401: KKMIESGLKL DMYSYKALIH GFCKVLELEN AKEELFSMIE KGFSPGYATY SWLVDGFYNQ NKQDEITKLL EEFEKRGLCA DVALYRGLIR RICKLEQVDY
501: AKVLFESMEK KGLVGDSVIF TTMAYAYWRT GKVTEASALF DVMYNRRLMV NLKLYKSISA SYAGDNDVLR FFWSHVGDRC LISKSILREM NRSEVL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g38730 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKR3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.