Factsheet for VIT_14s0083g00550.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20741	Soybean	cytosol	64.24	64.57
KRH13392	Soybean	cytosol	64.07	64.4
Solyc04g050550.1.1	Tomato	cytosol	62.37	62.59
AT5G38730.1	Thale cress	cytosol	58.98	58.39
Bra028204.1-P	Field mustard	cytosol	58.64	58.35
CDX74507	Canola	cytosol	58.64	58.35
CDY67116	Canola	cytosol	58.31	58.01
GSMUA_Achr1P17710_001	Banana	cytosol	54.41	52.54
Os02t0827900-03	Rice	plastid	46.61	47.41
Zm00001d018528_P001	Maize	cytosol	46.1	46.82
EES07796	Sorghum	cytosol, endoplasmic reticulum, extracellular	46.95	46.17
TraesCS6D01G355100.1	Wheat	plastid	46.1	45.56
TraesCS6B01G408200.1	Wheat	plastid	45.93	45.39
TraesCS6A01G371200.1	Wheat	plastid	45.59	45.06
HORVU6Hr1G087430.7	Barley	cytosol	45.76	43.76
VIT_14s0006g00170.t01	Wine grape	mitochondrion	27.29	27.2
VIT_12s0057g00740.t01	Wine grape	mitochondrion	23.9	26.6
VIT_14s0060g01220.t01	Wine grape	mitochondrion	27.12	26.27
VIT_06s0004g04770.t01	Wine grape	plastid	24.07	25.22
VIT_12s0055g00970.t01	Wine grape	plastid	26.78	24.92
VIT_08s0040g01530.t01	Wine grape	cytosol	24.92	23.71
VIT_17s0000g03060.t01	Wine grape	plastid	25.93	23.18
VIT_01s0010g01780.t01	Wine grape	cytosol	21.53	22.84
VIT_06s0009g03510.t01	Wine grape	mitochondrion	23.05	22.33
VIT_01s0011g04390.t01	Wine grape	plastid	24.58	20.2
VIT_01s0026g01280.t01	Wine grape	mitochondrion, plastid	25.42	20.05
VIT_13s0019g03690.t01	Wine grape	cytosol	16.27	19.67
VIT_03s0063g00930.t01	Wine grape	cytosol, plastid	25.08	19.42
VIT_01s0011g01910.t01	Wine grape	mitochondrion	23.05	19.21
VIT_17s0000g06480.t01	Wine grape	cytosol	7.63	16.54

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100254848	wikigene:100254848	MapMan:35.1	EMBL:AM425654	ProteinID:CAN75614
ProteinID:CAN75614.1	ProteinID:CCB44064	ProteinID:CCB44064.1	UniProt:F6GVS9	EMBL:FN594955	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100254848	wikigene:LOC100254848	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF279	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000210895E	ArrayExpress:VIT_14s0083g00550	EnsemblPlantsGene:VIT_14s0083g00550	EnsemblPlants:VIT_14s0083g00550.t01
RefSeq:XP_002279045	RefSeq:XP_002279045.1	:	:	:	:

Description

No Description!

Coordinates

chr14:+:22600241..22604340

Molecular Weight (calculated)

67277.1 Da

IEP (calculated)

8.580

GRAVY (calculated)

-0.090

Length

590 amino acids

Sequence
(BLAST)

001: MASLVFQCGE TQLAKIVCGI VVKGHWNSLL KPNVGSNLTS TILNQVLLNL SLDGCCVSWA FFKWVESNLN HKHSLQSSWT MIHTLAKHKQ FKTAQNLLER
101: IAVRDYLSSP SVLNAVVRIH DDPDSNSQIL SWLVIFYANS RMTQDAIQVF EHMRVHGFKP HLHACTVLLN SLAKARLTNM VWKVYKKMVR VGVVPNIHIF
201: NVLIHACCKS GDVEKAEQLL NEMESRFIFP DLFTYNTLIS LYCKKGMHYE ALGIQDRMER GGVSPDIVTY NSLIYGFCRE GRMREALRLF REINGATPNH
301: VTYTTLIDGY CRVNDLEEAL RLREVMEVEG LHPGVVTYNS ILRKLCEEGK IKDANRLLNE MSERKVEPDN VTCNTLINAY CKIGDMGSAM KVKKKMLEAG
401: LKPDQFTFKA LIHGFCKLHE VDSAKEFLFE MLDAGFSPSY STYSWLVDSY YDQDNKEAVI RLPDELSRKG LFVDISVYRA LIRRLCKIDK IESAERIFTL
501: MQGKGMKGDS VVYTSLAYAY FKAGKAIAAS DMLDEMDKRR LMITLKIYRC FSASYAGDGS ILGLFWDHVI ERRLISKNIL KYIQQLDGSM

Best Arabidopsis Sequence Match ( AT5G38730.1 )
(BLAST)

001: MVNLLSANRE ALIAQSICAT VLKGNWKNIL KHKVDSGLLK SAITTQVISE LSLFSGYGGP SLSWSFFIWT DSLPSSKHSL QSSWKMILIL TKHKHFKTAH
101: QLLDKLAQRE LLSSPLVLRS LVGGVSEDPE DVSHVFSWLM IYYAKAGMIN DSIVVFEQIR SCGLKPHLQA CTVLLNSLVK QRLTDTVWKI FKKMVKLGVV
201: ANIHVYNVLV HACSKSGDPE KAEKLLSEME EKGVFPDIFT YNTLISVYCK KSMHFEALSV QDRMERSGVA PNIVTYNSFI HGFSREGRMR EATRLFREIK
301: DDVTANHVTY TTLIDGYCRM NDIDEALRLR EVMESRGFSP GVVTYNSILR KLCEDGRIRE ANRLLTEMSG KKIEPDNITC NTLINAYCKI EDMVSAVKVK
401: KKMIESGLKL DMYSYKALIH GFCKVLELEN AKEELFSMIE KGFSPGYATY SWLVDGFYNQ NKQDEITKLL EEFEKRGLCA DVALYRGLIR RICKLEQVDY
501: AKVLFESMEK KGLVGDSVIF TTMAYAYWRT GKVTEASALF DVMYNRRLMV NLKLYKSISA SYAGDNDVLR FFWSHVGDRC LISKSILREM NRSEVL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g38730 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKR3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.