Factsheet for VIT_01s0026g01280.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99196	Soybean	cytosol	51.34	72.73
KRH45820	Soybean	cytosol, mitochondrion, plastid	69.12	69.68
PGSC0003DMT400058276	Potato	mitochondrion	66.44	66.09
AT1G05670.3	Thale cress	mitochondrion	61.5	62.08
CDY47261	Canola	plastid	60.29	61.87
CDY10136	Canola	cytosol	30.08	61.48
Bra015447.1-P	Field mustard	cytosol	35.83	61.47
OQU90004	Sorghum	cytosol	35.43	55.79
GSMUA_Achr8P04810_001	Banana	mitochondrion	53.34	54.88
Os07t0513200-01	Rice	mitochondrion	46.12	45.76
Zm00001d006478_P001	Maize	mitochondrion	44.38	44.56
TraesCS2D01G229300.1	Wheat	mitochondrion	44.38	44.5
TraesCS2B01G273600.1	Wheat	plastid	44.12	44.24
TraesCS2A01G223300.1	Wheat	mitochondrion, plastid	44.65	43.43
HORVU2Hr1G046710.2	Barley	cytosol, plastid	44.12	42.64
VIT_06s0009g03510.t01	Wine grape	mitochondrion	28.21	34.65
VIT_01s0010g01780.t01	Wine grape	cytosol	24.73	33.27
VIT_14s0006g00170.t01	Wine grape	mitochondrion	23.53	29.73
VIT_14s0060g01220.t01	Wine grape	mitochondrion	24.06	29.56
VIT_12s0055g00970.t01	Wine grape	plastid	23.53	27.76
VIT_01s0011g04390.t01	Wine grape	plastid	26.6	27.72
VIT_12s0057g00740.t01	Wine grape	mitochondrion	19.12	26.98
VIT_03s0063g00930.t01	Wine grape	cytosol, plastid	27.41	26.9
VIT_06s0004g04770.t01	Wine grape	plastid	20.19	26.82
VIT_08s0040g01530.t01	Wine grape	cytosol	22.19	26.77
VIT_13s0019g03690.t01	Wine grape	cytosol	16.98	26.02
VIT_01s0011g01910.t01	Wine grape	mitochondrion	24.6	25.99
VIT_14s0083g00550.t01	Wine grape	cytosol	20.05	25.42
VIT_17s0000g06480.t01	Wine grape	cytosol	9.09	25.0
VIT_17s0000g03060.t01	Wine grape	plastid	20.19	22.88

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100250172	wikigene:100250172	MapMan:35.1	ProteinID:CCB56602	ProteinID:CCB56602.1
UniProt:F6HPH4	EMBL:FN596002	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005794	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100250172	wikigene:LOC100250172	PFAM:PF01535	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF949	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI00015CB148	ArrayExpress:VIT_01s0026g01280	EnsemblPlantsGene:VIT_01s0026g01280	EnsemblPlants:VIT_01s0026g01280.t01	RefSeq:XP_002268680
RefSeq:XP_002268680.2	RefSeq:XP_010652656.1	RefSeq:XP_010652663.1	RefSeq:XP_010652679.1	RefSeq:XP_010652686.1	RefSeq:XP_010652689.1
RefSeq:XP_010652692.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:10275245..10277491

Molecular Weight (calculated)

85871.9 Da

IEP (calculated)

7.616

GRAVY (calculated)

-0.120

Length

748 amino acids

Sequence
(BLAST)

001: MKRHVISFSR HCFQVFSYHS HLDPALNRLS FFRRCFSEKL SSFDSTTRNF PDYSPKKPII QDSELVHRIS IAIKQRRSEP LRRVLKPYES KFRADHLIWV
101: LMNIKNDYRL VLSFFEWACL RRDPSLEARC IVAQIATASK DLKMARKLIQ DFWVNPNLDV GVSFGHFVEQ LIYTYKDWGS DPRVFDIFFQ VLVEAGMLDE
201: ARKLFDKMLN YGLLISVDSC NLFISHLSED LDGIKIALKV FVEFPEVGVC WNTASYNIIT HSLCQLGRVV EAHQLLLQME LRGCIPDVIS YSTVINGYCQ
301: VGELQRVLKL IEEMQIKGLK PNPYTYNGVI LLLCKTGKVA EAERVLREMI SEGIAPDGVI YTTLIDGFCK LGNVSSAYRL FDEMQKRKIS PDFITYTAVI
401: CGLCQTGRVM EADKLFHEMV CKRLEPDEVT YTALIDGYCK EGKMKEAFSL HNQMLQMGLT PNIVTYTALA DGLCKCGEVD TANELLHEMC RKGLELNIYT
501: YNSLVNGLCK AGNIDQAVKL MKDMEVAGFH PDAVTYTTLM DAYCKSREMV RAHELLRQML DRELQPTVVT FNVLMNGFCM SGMLEDGEKL LKWMLEKGIM
601: PNATTYNSLI KQYCIRNNMR ATTEIYRGMC AKGVVPDGNT YNILIKGHCK ARNMKEAWFL HRDMVGKGFN LTVSSYNALI KGFYKRKKFL EARELFEQMR
701: REGLVADREI YNIFADINYD EGKMELTLEL CDEAIEKCLV GDIQTKNT

Best Arabidopsis Sequence Match ( AT1G05670.3 )
(BLAST)

001: MKKPFTGLLM KRGTLSSFRN FIQLFSLQSR GLSFSTLTDT RPFPDYSPKK ASVRDTEFVH QITNVIKLRR AEPLRRSLKP YECKFKTDHL IWVLMKIKCD
101: YRLVLDFFDW ARSRRDSNLE SLCIVIHLAV ASKDLKVAQS LISSFWERPK LNVTDSFVQF FDLLVYTYKD WGSDPRVFDV FFQVLVDFGL LREARRVFEK
201: MLNYGLVLSV DSCNVYLTRL SKDCYKTATA IIVFREFPEV GVCWNVASYN IVIHFVCQLG RIKEAHHLLL LMELKGYTPD VISYSTVVNG YCRFGELDKV
301: WKLIEVMKRK GLKPNSYIYG SIIGLLCRIC KLAEAEEAFS EMIRQGILPD TVVYTTLIDG FCKRGDIRAA SKFFYEMHSR DITPDVLTYT AIISGFCQIG
401: DMVEAGKLFH EMFCKGLEPD SVTFTELING YCKAGHMKDA FRVHNHMIQA GCSPNVVTYT TLIDGLCKEG DLDSANELLH EMWKIGLQPN IFTYNSIVNG
501: LCKSGNIEEA VKLVGEFEAA GLNADTVTYT TLMDAYCKSG EMDKAQEILK EMLGKGLQPT IVTFNVLMNG FCLHGMLEDG EKLLNWMLAK GIAPNATTFN
601: SLVKQYCIRN NLKAATAIYK DMCSRGVGPD GKTYENLVKG HCKARNMKEA WFLFQEMKGK GFSVSVSTYS VLIKGFLKRK KFLEAREVFD QMRREGLAAD
701: KEIFDFFSDT KYKGKRPDTI VDPIDEIIEN YLVDEQLRGA N

Arabidopsis Description

Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A068FPW3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.