Factsheet for VIT_14s0060g01220.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29211	Soybean	cytosol	57.96	60.55
Solyc01g100450.1.1	Tomato	mitochondrion	56.16	56.53
PGSC0003DMT400007278	Potato	mitochondrion	55.66	56.03
AT1G09820.1	Thale cress	mitochondrion, plastid	51.72	51.98
CDX93473	Canola	mitochondrion	52.22	51.96
Bra019985.1-P	Field mustard	cytosol	52.05	51.8
CDX94941	Canola	cytosol, plastid	52.22	51.71
KXG31660	Sorghum	mitochondrion	27.91	49.71
GSMUA_Achr3P01360_001	Banana	mitochondrion	41.87	49.13
Zm00001d039548_P001	Maize	mitochondrion	36.45	48.9
TraesCS1A01G160000.1	Wheat	mitochondrion	36.45	44.76
HORVU1Hr1G042440.2	Barley	mitochondrion	40.89	43.46
TraesCS1D01G157200.1	Wheat	mitochondrion	40.07	42.51
Os10t0484300-01	Rice	mitochondrion	40.23	42.39
TraesCS1B01G176600.2	Wheat	mitochondrion	40.72	42.25
VIT_06s0004g04770.t01	Wine grape	plastid	27.09	29.31
VIT_14s0006g00170.t01	Wine grape	mitochondrion	27.91	28.72
VIT_01s0010g01780.t01	Wine grape	cytosol	24.96	27.34
VIT_12s0055g00970.t01	Wine grape	plastid	28.24	27.13
VIT_14s0083g00550.t01	Wine grape	cytosol	26.27	27.12
VIT_08s0040g01530.t01	Wine grape	cytosol	26.44	25.97
VIT_06s0009g03510.t01	Wine grape	mitochondrion	25.62	25.62
VIT_03s0063g00930.t01	Wine grape	cytosol, plastid	32.02	25.59
VIT_12s0057g00740.t01	Wine grape	mitochondrion	21.67	24.91
VIT_01s0026g01280.t01	Wine grape	mitochondrion, plastid	29.56	24.06
VIT_17s0000g03060.t01	Wine grape	plastid	24.96	23.03
VIT_01s0011g04390.t01	Wine grape	plastid	27.09	22.98
VIT_01s0011g01910.t01	Wine grape	mitochondrion	24.96	21.47
VIT_13s0019g03690.t01	Wine grape	cytosol	17.08	21.31
VIT_17s0000g06480.t01	Wine grape	cytosol	8.37	18.75

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100259627	wikigene:100259627	MapMan:35.1	ProteinID:CCB61912	ProteinID:CCB61912.1
UniProt:F6I4S5	EMBL:FN596746	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100259627
wikigene:LOC100259627	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF745	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00021099A8
ArrayExpress:VIT_14s0060g01220	EnsemblPlantsGene:VIT_14s0060g01220	EnsemblPlants:VIT_14s0060g01220.t01	RefSeq:XP_002277942	RefSeq:XP_002277942.2	SEG:seg

Description

No Description!

Coordinates

chr14:-:964888..966717

Molecular Weight (calculated)

68278.1 Da

IEP (calculated)

8.916

GRAVY (calculated)

-0.173

Length

609 amino acids

Sequence
(BLAST)

001: MNCLRLTQFP KRCLSTRFPS LDPKLNNTKT PFSSPNSTYT TPNSHTFDTP TISQLIAKQH WSKLKTIVKE TNPSSLLQHL FNSEAQPDLI LCYFKWTQKE
101: FGAIHNVEQF CRLLHLLANA KNYNKIRALL DSFAKNAHYS NSTIFHSLSV LGSWGCANSI IVDMLVWAYV KNGEMDLALE GFDRAGDYGF RLSALSCNPM
201: LVSLVKEGRI GVVESVYKEM IRRRIGVNVV TFDVVINGLC KVGKFQKAGD VVEDMKAWGF SPSVITYNTI IDGYCKAGKM FKADALLKEM VAKRIHPNEI
301: TFNILIDGFC RDENVTAAKK VFEEMQRQGL QPNVVTYNSL INGLCSNGKL DEALGLQDKM SGMGLKPNVV TYNALINGFC KKKMLKEARE MLDDIGKRGL
401: APNVITFNTL IDAYGKAGRM DDAFLLRSMM LDTGVCPNVS TYNCLIVGFC REGNVKEARK LAKEMEGNGL KADLVTYNIL VDALCKKGET RKAVRLLDEM
501: FEVGLNPSHL TYNALIDGYF REGNSTAALN VRTLMEKKGR RANIVTYNVL IKGFCNKGKL EEANRLLNEM LEKGLIPNRT TYDILRDEMM EKGFIPDIDG
601: HLYNVSISS

Best Arabidopsis Sequence Match ( AT1G09820.1 )
(BLAST)

001: MFPKSLAVSR KNSNLTKGVS GLRRLCSSSS TITGSPCPPR YDVAVIADLI EKQHWSKLGV HVTDINPNEL FRQLISSELD PDLCLRYYSW LVKNSDISVS
101: LELTFKLLHS LANAKRYSKI RSFLDGFVRN GSDHQVHSIF HAISMCDNVC VNSIIADMLV LAYANNSRFE LGFEAFKRSG YYGYKLSALS CKPLMIALLK
201: ENRSADVEYV YKEMIRRKIQ PNVFTFNVVI NALCKTGKMN KARDVMEDMK VYGCSPNVVS YNTLIDGYCK LGGNGKMYKA DAVLKEMVEN DVSPNLTTFN
301: ILIDGFWKDD NLPGSMKVFK EMLDQDVKPN VISYNSLING LCNGGKISEA ISMRDKMVSA GVQPNLITYN ALINGFCKND MLKEALDMFG SVKGQGAVPT
401: TRMYNMLIDA YCKLGKIDDG FALKEEMERE GIVPDVGTYN CLIAGLCRNG NIEAAKKLFD QLTSKGLPDL VTFHILMEGY CRKGESRKAA MLLKEMSKMG
501: LKPRHLTYNI VMKGYCKEGN LKAATNMRTQ MEKERRLRMN VASYNVLLQG YSQKGKLEDA NMLLNEMLEK GLVPNRITYE IVKEEMVDQG FVPDIEGHLF
601: NVSTKS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g09820 [Source:UniProtKB/Swiss-Prot;Acc:O04504]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.