Factsheet for Zm00001d039548_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31660	Sorghum	mitochondrion	68.28	90.64
TraesCS1D01G157200.1	Wheat	mitochondrion	73.13	57.84
HORVU1Hr1G042440.2	Barley	mitochondrion	72.69	57.59
TraesCS1A01G160000.1	Wheat	mitochondrion	62.56	57.26
TraesCS1B01G176600.2	Wheat	mitochondrion	73.35	56.73
Os10t0484300-01	Rice	mitochondrion	71.81	56.4
GSMUA_Achr3P01360_001	Banana	mitochondrion	45.37	39.69
KRH29211	Soybean	cytosol	47.58	37.05
VIT_14s0060g01220.t01	Wine grape	mitochondrion	48.9	36.45
PGSC0003DMT400007278	Potato	mitochondrion	47.36	35.54
Solyc01g100450.1.1	Tomato	mitochondrion	46.92	35.21
Bra019985.1-P	Field mustard	cytosol	45.15	33.5
CDX93473	Canola	mitochondrion	44.71	33.17
CDX94941	Canola	cytosol, plastid	44.49	32.85
AT1G09820.1	Thale cress	mitochondrion, plastid	43.17	32.34
Zm00001d003397_P001	Maize	endoplasmic reticulum, extracellular	28.63	26.86
Zm00001d003396_P001	Maize	endoplasmic reticulum, extracellular	28.63	26.86
Zm00001d042911_P001	Maize	mitochondrion, plastid	23.35	25.85
Zm00001d003294_P001	Maize	plastid	28.63	24.81
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	29.07	24.58
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	28.85	24.39
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	27.97	24.38
Zm00001d000093_P001	Maize	cytosol	27.53	23.63
Zm00001d027800_P001	Maize	mitochondrion	31.5	22.03
Zm00001d023302_P001	Maize	mitochondrion	33.92	22.0
Zm00001d018528_P001	Maize	cytosol	27.09	21.17
Zm00001d009391_P001	Maize	cytosol	25.99	20.59
Zm00001d020436_P001	Maize	mitochondrion	27.97	20.0
Zm00001d010121_P001	Maize	plastid	29.96	19.68
Zm00001d045319_P001	Maize	plastid	29.52	19.39
Zm00001d030479_P001	Maize	plastid	21.15	19.05
Zm00001d044707_P001	Maize	plastid	28.63	18.26
Zm00001d023422_P001	Maize	plastid	28.41	18.02
Zm00001d052540_P001	Maize	plastid	28.41	17.89
Zm00001d006478_P001	Maize	mitochondrion	28.41	17.32
Zm00001d048880_P001	Maize	mitochondrion	25.55	17.16
Zm00001d028107_P001	Maize	nucleus	23.79	15.13

Protein Annotations

EnsemblPlants:Zm00001d039548_P001	EnsemblPlants:Zm00001d039548_T001	EnsemblPlantsGene:Zm00001d039548	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF745	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:ONM29188.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0008433C24	UniProt:A0A1D6MID9	MapMan:35.1	:	:

Description

Pentatricopeptide repeat-containing protein

Coordinates

chr3:-:7821886..7823250

Molecular Weight (calculated)

49773.9 Da

IEP (calculated)

9.039

GRAVY (calculated)

-0.009

Length

454 amino acids

Sequence
(BLAST)

001: MLVLALARAS QPLAAYEAFL LAGADCPRYR PSAFSVNALL AALVRADRVD LADRAFRAAL RRRVSPDLFT FNIVISGFCK TGQLRKAGDV AKNISAWGVA
101: PSVATYNTLI DGYCKRGQVG KMYHVDALLK EMIQAGISPD VVTFNVLING YCKEPNITAA IKVFQEMRQQ GIPANVVTYN SLVSGLCREG KVEDSIKLVE
201: EMEELGLACI LSTMNSVLNG FCKKGMMVEA EGWVDGIAQR GMKPNVITYN TLVDGYRRLG KMKEAAAAKD AMAGKGISPN VKTYNCLITG FTTSRDWRSV
301: SGLLDEMKEK GVKADVVTYN VLIGALCCKG EVRKAVKLLD EMVEVGLEPK HVAYNTIING FCEKGDAQGA HEIRLRMEKR KKRANVVTYN VFLKYFCKMG
401: KMDEANVVLN EMLEKGLVPN RITYEIINSG MIEKGYVPDI SGYAADVSKN LTSS

Best Arabidopsis Sequence Match ( AT1G09820.1 )
(BLAST)

001: MFPKSLAVSR KNSNLTKGVS GLRRLCSSSS TITGSPCPPR YDVAVIADLI EKQHWSKLGV HVTDINPNEL FRQLISSELD PDLCLRYYSW LVKNSDISVS
101: LELTFKLLHS LANAKRYSKI RSFLDGFVRN GSDHQVHSIF HAISMCDNVC VNSIIADMLV LAYANNSRFE LGFEAFKRSG YYGYKLSALS CKPLMIALLK
201: ENRSADVEYV YKEMIRRKIQ PNVFTFNVVI NALCKTGKMN KARDVMEDMK VYGCSPNVVS YNTLIDGYCK LGGNGKMYKA DAVLKEMVEN DVSPNLTTFN
301: ILIDGFWKDD NLPGSMKVFK EMLDQDVKPN VISYNSLING LCNGGKISEA ISMRDKMVSA GVQPNLITYN ALINGFCKND MLKEALDMFG SVKGQGAVPT
401: TRMYNMLIDA YCKLGKIDDG FALKEEMERE GIVPDVGTYN CLIAGLCRNG NIEAAKKLFD QLTSKGLPDL VTFHILMEGY CRKGESRKAA MLLKEMSKMG
501: LKPRHLTYNI VMKGYCKEGN LKAATNMRTQ MEKERRLRMN VASYNVLLQG YSQKGKLEDA NMLLNEMLEK GLVPNRITYE IVKEEMVDQG FVPDIEGHLF
601: NVSTKS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g09820 [Source:UniProtKB/Swiss-Prot;Acc:O04504]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.