Factsheet for Zm00001d000093_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044707_P001	Maize	plastid	98.49	73.17
Zm00001d023422_P001	Maize	plastid	88.47	65.36
OQU78719	Sorghum	cytosol	89.98	62.3
Zm00001d052540_P001	Maize	plastid	77.32	56.73
Os12t0152600-01	Rice	plastid	75.8	56.01
HORVU5Hr1G042300.1	Barley	plastid	71.08	52.73
TraesCS5A01G128400.1	Wheat	plastid	65.97	51.93
TraesCS5D01G136000.1	Wheat	plastid	65.78	51.79
TraesCS5B01G127400.1	Wheat	plastid	65.78	51.79
Bra024554.1-P	Field mustard	cytosol	25.71	40.24
GSMUA_Achr6P35510_001	Banana	cytosol	51.23	38.66
CDY04764	Canola	cytosol	25.71	38.42
Bra024552.1-P	Field mustard	cytosol	18.15	38.1
CDY21405	Canola	cytosol	30.25	37.83
CDY04754	Canola	cytosol	16.82	36.78
KRH16451	Soybean	plastid	47.64	36.68
KRH18049	Soybean	plastid	47.26	36.39
VIT_01s0011g04390.t01	Wine grape	plastid	47.45	34.96
PGSC0003DMT400078379	Potato	cytosol	45.37	34.68
Solyc05g008560.1.1	Tomato	mitochondrion	45.37	31.83
AT1G22960.1	Thale cress	mitochondrion	39.51	29.11
Zm00001d039548_P001	Maize	mitochondrion	23.63	27.53
Zm00001d042911_P001	Maize	mitochondrion, plastid	20.23	26.1
Zm00001d027800_P001	Maize	mitochondrion	29.68	24.19
Zm00001d010121_P001	Maize	plastid	31.57	24.17
Zm00001d045319_P001	Maize	plastid	31.38	24.02
Zm00001d003294_P001	Maize	plastid	23.63	23.86
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	23.44	23.09
Zm00001d003396_P001	Maize	endoplasmic reticulum, extracellular	20.98	22.93
Zm00001d003397_P001	Maize	endoplasmic reticulum, extracellular	20.98	22.93
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	23.25	22.91
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	22.5	22.84
Zm00001d023302_P001	Maize	mitochondrion	29.68	22.43
Zm00001d020436_P001	Maize	mitochondrion	26.84	22.36
Zm00001d018528_P001	Maize	cytosol	23.06	21.0
Zm00001d048880_P001	Maize	mitochondrion	26.65	20.86
CDY04753	Canola	mitochondrion, plastid	16.07	20.43
Zm00001d006478_P001	Maize	mitochondrion	26.65	18.93
Zm00001d030479_P001	Maize	plastid	17.2	18.06
Zm00001d028107_P001	Maize	nucleus	24.01	17.79
Zm00001d009391_P001	Maize	cytosol	18.53	17.1

Protein Annotations

EnsemblPlants:Zm00001d000093_P001	EnsemblPlants:Zm00001d000093_T001	EnsemblPlantsGene:Zm00001d000093	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF724	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI0008434CA1	UniProt:A0A1X7YEP9	MapMan:35.1	:

Description

Pentatricopeptide repeat-containing protein mitochondrial

Coordinates

chrB73V4_ctg31:-:721884..723473

Molecular Weight (calculated)

59344.5 Da

IEP (calculated)

6.232

GRAVY (calculated)

-0.012

Length

529 amino acids

Sequence
(BLAST)

001: MASHGVAPDV KDCNHVLRAL RDAARWDDIC AVHEEMLQLG IEPSIVTYNT LLDSFLKEGR KDKVAMLLKE METRGSGCLP NDVTYNVVIT GLTRKGDLEE
101: AAELVEGMRL SKKASSFTYN PLITGLLARG CVKKVYDLQL EMENEGIMPT VVTYNAMIHG LLQSGLVEAA QVKFAEMRAM GLLPDVITYN SLLNGYCKAG
201: NLKEALLLFG DLRRAGLAPT VLTYNIRIDG YCRLGDLEEA RILKEEMGEQ GCLPNVCTYT ILMKGSLNVC SLAMAREFFD EMLSKGLQPD CFAYNTRICA
301: ELILGDIARA LELREVLMLE GISSDTVTYN ILIHGLCKTG NLKDAKELQM KMVSNGLQPD CITYTCLIHA HCERGLLREA RKIFNNMISD GLLPSAVTFT
401: VIIHAYCRRG NLYSAYGWFR KMLEEGVEPN EITYNVLIHA LCRMGRTQLA SHHFHEMLER GLVANKYTYT LLIDGNCKVG NWEDAMRFYF EMHQNGIHPD
501: YLTHKALVKG FDGHVHHTIE YLDIVILGE

Best Arabidopsis Sequence Match ( AT1G22960.1 )
(BLAST)

001: MILCLRLCLR ASRSFFSIST TNNNNNLSRF LFRFSTLPHC AASSSSSSSN LESYYANLIL SSHGDSNKPN RKWSSHQFRL LLTDPNLLIR VLNMIRVKPE
101: IAFRFFNWIQ RQSDVKQSRQ AFAAMLEILA ENDLMSEAYL VAERSIDLGM HEIDDLLIDG SFDKLIALKL LDLLLWVYTK KSMAEKFLLS FEKMIRKGFL
201: PSVRNCNIVL KVLRDSRMMN KASAVYETMI EHGIMPTVIT FNTMLDSCFK AGDLERVDKI WLEMKRRNIE FSEVTYNILI NGFSKNGKME EARRFHGDMR
301: RSGFAVTPYS FNPLIEGYCK QGLFDDAWGV TDEMLNAGIY PTTSTYNIYI CALCDFGRID DARELLSSMA APDVVSYNTL MHGYIKMGKF VEASLLFDDL
401: RAGDIHPSIV TYNTLIDGLC ESGNLEGAQR LKEEMTTQLI FPDVITYTTL VKGFVKNGNL SMATEVYDEM LRKGIKPDGY AYTTRAVGEL RLGDSDKAFR
501: LHEEMVATDH HAPDLTIYNV RIDGLCKVGN LVKAIEFQRK IFRVGLVPDH VTYTTVIRGY LENGQFKMAR NLYDEMLRKR LYPSVITYFV LIYGHAKAGR
601: LEQAFQYSTE MKKRGVRPNV MTHNALLYGM CKAGNIDEAY RYLCKMEEEG IPPNKYSYTM LISKNCDFEK WEEVVKLYKE MLDKEIEPDG YTHRALFKHL
701: EKDHESREVE FLERLLLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g22960, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C7Q9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.