Factsheet for AT1G22960.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024552.1-P	Field mustard	cytosol	27.16	77.38
Bra024554.1-P	Field mustard	cytosol	35.79	76.04
CDY04754	Canola	cytosol	25.07	74.38
CDY21405	Canola	cytosol	43.45	73.76
CDY04764	Canola	cytosol	34.96	70.9
CDY04753	Canola	mitochondrion, plastid	39.69	68.51
VIT_01s0011g04390.t01	Wine grape	plastid	47.49	47.49
KRH16451	Soybean	plastid	44.85	46.87
KRH18049	Soybean	plastid	44.71	46.72
PGSC0003DMT400078379	Potato	cytosol	42.2	43.79
Solyc05g008560.1.1	Tomato	mitochondrion	43.04	40.98
GSMUA_Achr6P35510_001	Banana	cytosol	39.83	40.8
Zm00001d000093_P001	Maize	cytosol	29.11	39.51
Zm00001d023422_P001	Maize	plastid	36.63	36.73
EES09272	Sorghum	plastid	36.49	36.04
Os12t0152600-01	Rice	plastid	35.79	35.89
Zm00001d044707_P001	Maize	plastid	35.24	35.53
Zm00001d052540_P001	Maize	plastid	35.1	34.95
OQU78719	Sorghum	cytosol	36.91	34.69
HORVU5Hr1G042300.1	Barley	plastid	34.4	34.64
TraesCS5B01G127400.1	Wheat	plastid	32.31	34.52
TraesCS5A01G128400.1	Wheat	plastid	32.17	34.38
TraesCS5D01G136000.1	Wheat	plastid	31.89	34.08
AT2G15630.1	Thale cress	mitochondrion	23.68	27.11
AT1G09820.1	Thale cress	mitochondrion, plastid	21.73	25.74
AT4G11690.1	Thale cress	endoplasmic reticulum	18.94	24.03
AT5G39710.1	Thale cress	mitochondrion	24.37	23.43
AT1G09680.1	Thale cress	mitochondrion	19.64	23.23
AT2G32630.1	Thale cress	mitochondrion, plastid	20.06	23.08
AT5G01110.2	Thale cress	cytosol, plastid	24.23	22.99
AT2G02150.1	Thale cress	mitochondrion, plastid	24.23	22.86
AT5G61400.1	Thale cress	mitochondrion	20.47	22.48
AT1G05670.3	Thale cress	mitochondrion	22.98	22.27
AT2G01740.1	Thale cress	cytosol	17.13	22.0
AT5G38730.1	Thale cress	cytosol	18.11	21.81
AT2G16880.1	Thale cress	cytosol	22.56	21.8
AT1G11710.1	Thale cress	mitochondrion	19.78	21.61
AT4G26680.1	Thale cress	mitochondrion	15.32	21.11
AT4G19890.1	Thale cress	plastid	20.2	20.68
AT5G40400.2	Thale cress	cytosol	18.66	19.68
AT2G19280.1	Thale cress	mitochondrion	18.8	19.48
AT2G28050.1	Thale cress	cytosol, plastid	11.7	18.18

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:838903	ProteinID:AAB72163.1	ProteinID:AEE30315.1	ProteinID:ANM57960.1
ArrayExpress:AT1G22960	EnsemblPlantsGene:AT1G22960	RefSeq:AT1G22960	TAIR:AT1G22960	RefSeq:AT1G22960-TAIR-G	EnsemblPlants:AT1G22960.1
TAIR:AT1G22960.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451
GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990
RefSeq:NP_001319064.1	RefSeq:NP_001320434.1	UniProt:P0C7Q9	PFAM:PF01535	PFAM:PF13041	PO:PO:0000037
PO:PO:0000293	PO:PO:0001078	PO:PO:0001185	PO:PO:0004507	PO:PO:0007057	PO:PO:0007611
PO:PO:0007616	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020100
PO:PO:0025022	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF724	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0000162E8B	SEG:seg	:	:

Description

Pentatricopeptide repeat-containing protein At1g22960, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C7Q9]

Coordinates

chr1:-:8127442..8130456

Molecular Weight (calculated)

82647.1 Da

IEP (calculated)

7.535

GRAVY (calculated)

-0.214

Length

718 amino acids

Sequence
(BLAST)

001: MILCLRLCLR ASRSFFSIST TNNNNNLSRF LFRFSTLPHC AASSSSSSSN LESYYANLIL SSHGDSNKPN RKWSSHQFRL LLTDPNLLIR VLNMIRVKPE
101: IAFRFFNWIQ RQSDVKQSRQ AFAAMLEILA ENDLMSEAYL VAERSIDLGM HEIDDLLIDG SFDKLIALKL LDLLLWVYTK KSMAEKFLLS FEKMIRKGFL
201: PSVRNCNIVL KVLRDSRMMN KASAVYETMI EHGIMPTVIT FNTMLDSCFK AGDLERVDKI WLEMKRRNIE FSEVTYNILI NGFSKNGKME EARRFHGDMR
301: RSGFAVTPYS FNPLIEGYCK QGLFDDAWGV TDEMLNAGIY PTTSTYNIYI CALCDFGRID DARELLSSMA APDVVSYNTL MHGYIKMGKF VEASLLFDDL
401: RAGDIHPSIV TYNTLIDGLC ESGNLEGAQR LKEEMTTQLI FPDVITYTTL VKGFVKNGNL SMATEVYDEM LRKGIKPDGY AYTTRAVGEL RLGDSDKAFR
501: LHEEMVATDH HAPDLTIYNV RIDGLCKVGN LVKAIEFQRK IFRVGLVPDH VTYTTVIRGY LENGQFKMAR NLYDEMLRKR LYPSVITYFV LIYGHAKAGR
601: LEQAFQYSTE MKKRGVRPNV MTHNALLYGM CKAGNIDEAY RYLCKMEEEG IPPNKYSYTM LISKNCDFEK WEEVVKLYKE MLDKEIEPDG YTHRALFKHL
701: EKDHESREVE FLERLLLS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.