Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028204.1-P | Field mustard | cytosol | 86.58 | 87.02 |
| CDX74507 | Canola | cytosol | 86.58 | 87.02 |
| CDY67116 | Canola | cytosol | 86.41 | 86.85 |
| VIT_14s0083g00550.t01 | Wine grape | cytosol | 58.39 | 58.98 |
| KRH20741 | Soybean | cytosol | 56.21 | 57.07 |
| KRH13392 | Soybean | cytosol | 55.54 | 56.39 |
| Solyc04g050550.1.1 | Tomato | cytosol | 55.2 | 55.95 |
| Zm00001d018528_P001 | Maize | cytosol | 43.12 | 44.23 |
| GSMUA_Achr1P17710_001 | Banana | cytosol | 45.13 | 44.03 |
| TraesCS6B01G408200.1 | Wheat | plastid | 43.12 | 43.05 |
| TraesCS6D01G355100.1 | Wheat | plastid | 43.12 | 43.05 |
| Os02t0827900-03 | Rice | plastid | 41.44 | 42.59 |
| TraesCS6A01G371200.1 | Wheat | plastid | 42.62 | 42.55 |
| EES07796 | Sorghum | cytosol, endoplasmic reticulum, extracellular | 42.62 | 42.33 |
| HORVU6Hr1G087430.7 | Barley | cytosol | 42.28 | 40.84 |
| AT4G11690.1 | Thale cress | endoplasmic reticulum | 22.48 | 23.67 |
| AT4G26680.1 | Thale cress | mitochondrion | 20.47 | 23.42 |
| AT1G09680.1 | Thale cress | mitochondrion | 23.83 | 23.39 |
| AT1G05670.3 | Thale cress | mitochondrion | 27.35 | 22.0 |
| AT2G32630.1 | Thale cress | mitochondrion, plastid | 22.99 | 21.96 |
| AT1G11710.1 | Thale cress | mitochondrion | 24.16 | 21.92 |
| AT1G09820.1 | Thale cress | mitochondrion, plastid | 21.98 | 21.62 |
| AT2G15630.1 | Thale cress | mitochondrion | 22.65 | 21.53 |
| AT2G01740.1 | Thale cress | cytosol | 19.8 | 21.11 |
| AT2G28050.1 | Thale cress | cytosol, plastid | 15.6 | 20.13 |
| AT5G39710.1 | Thale cress | mitochondrion | 25.0 | 19.95 |
| AT5G40400.2 | Thale cress | cytosol | 22.15 | 19.38 |
| AT5G01110.2 | Thale cress | cytosol, plastid | 24.33 | 19.15 |
| AT5G61400.1 | Thale cress | mitochondrion | 20.47 | 18.65 |
| AT2G16880.1 | Thale cress | cytosol | 23.15 | 18.57 |
| AT2G02150.1 | Thale cress | mitochondrion, plastid | 23.32 | 18.27 |
| AT1G22960.1 | Thale cress | mitochondrion | 21.81 | 18.11 |
| AT2G19280.1 | Thale cress | mitochondrion | 20.97 | 18.04 |
| AT4G19890.1 | Thale cress | plastid | 21.14 | 17.97 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:833864 | ProteinID:AED94354.1 | ArrayExpress:AT5G38730 | EnsemblPlantsGene:AT5G38730 |
| RefSeq:AT5G38730 | TAIR:AT5G38730 | RefSeq:AT5G38730-TAIR-G | EnsemblPlants:AT5G38730.1 | TAIR:AT5G38730.1 | ProteinID:BAB10131.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004519 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009451 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0043231 |
| GO:GO:0090305 | InterPro:IPR002885 | InterPro:IPR011990 | RefSeq:NP_198689.1 | PFAM:PF01535 | PFAM:PF12854 |
| PFAM:PF13041 | PFAM:PF13812 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS51375 |
| PANTHER:PTHR24015 | PANTHER:PTHR24015:SF279 | InterPro:Pentatricopeptide_repeat | UniProt:Q9FKR3 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf |
| UniParc:UPI00000A94D3 | SEG:seg | : | : | : | : |
Description
Pentatricopeptide repeat-containing protein At5g38730 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKR3]
Coordinates
chr5:+:15510842..15512934
Molecular Weight (calculated)
67898.8 Da
IEP (calculated)
8.910
GRAVY (calculated)
-0.101
Length
596 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNLLSANRE ALIAQSICAT VLKGNWKNIL KHKVDSGLLK SAITTQVISE LSLFSGYGGP SLSWSFFIWT DSLPSSKHSL QSSWKMILIL TKHKHFKTAH
101: QLLDKLAQRE LLSSPLVLRS LVGGVSEDPE DVSHVFSWLM IYYAKAGMIN DSIVVFEQIR SCGLKPHLQA CTVLLNSLVK QRLTDTVWKI FKKMVKLGVV
201: ANIHVYNVLV HACSKSGDPE KAEKLLSEME EKGVFPDIFT YNTLISVYCK KSMHFEALSV QDRMERSGVA PNIVTYNSFI HGFSREGRMR EATRLFREIK
301: DDVTANHVTY TTLIDGYCRM NDIDEALRLR EVMESRGFSP GVVTYNSILR KLCEDGRIRE ANRLLTEMSG KKIEPDNITC NTLINAYCKI EDMVSAVKVK
401: KKMIESGLKL DMYSYKALIH GFCKVLELEN AKEELFSMIE KGFSPGYATY SWLVDGFYNQ NKQDEITKLL EEFEKRGLCA DVALYRGLIR RICKLEQVDY
501: AKVLFESMEK KGLVGDSVIF TTMAYAYWRT GKVTEASALF DVMYNRRLMV NLKLYKSISA SYAGDNDVLR FFWSHVGDRC LISKSILREM NRSEVL
101: QLLDKLAQRE LLSSPLVLRS LVGGVSEDPE DVSHVFSWLM IYYAKAGMIN DSIVVFEQIR SCGLKPHLQA CTVLLNSLVK QRLTDTVWKI FKKMVKLGVV
201: ANIHVYNVLV HACSKSGDPE KAEKLLSEME EKGVFPDIFT YNTLISVYCK KSMHFEALSV QDRMERSGVA PNIVTYNSFI HGFSREGRMR EATRLFREIK
301: DDVTANHVTY TTLIDGYCRM NDIDEALRLR EVMESRGFSP GVVTYNSILR KLCEDGRIRE ANRLLTEMSG KKIEPDNITC NTLINAYCKI EDMVSAVKVK
401: KKMIESGLKL DMYSYKALIH GFCKVLELEN AKEELFSMIE KGFSPGYATY SWLVDGFYNQ NKQDEITKLL EEFEKRGLCA DVALYRGLIR RICKLEQVDY
501: AKVLFESMEK KGLVGDSVIF TTMAYAYWRT GKVTEASALF DVMYNRRLMV NLKLYKSISA SYAGDNDVLR FFWSHVGDRC LISKSILREM NRSEVL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.