Factsheet for Zm00001d018528_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07796	Sorghum	cytosol, endoplasmic reticulum, extracellular	91.22	88.33
Os02t0827900-03	Rice	plastid	76.42	76.55
TraesCS6A01G371200.1	Wheat	plastid	76.08	74.04
TraesCS6B01G408200.1	Wheat	plastid	75.9	73.87
TraesCS6D01G355100.1	Wheat	plastid	75.22	73.2
HORVU6Hr1G087430.7	Barley	cytosol	75.22	70.83
GSMUA_Achr1P17710_001	Banana	cytosol	49.05	46.64
VIT_14s0083g00550.t01	Wine grape	cytosol	46.82	46.1
CDY67116	Canola	cytosol	45.96	45.03
Bra028204.1-P	Field mustard	cytosol	45.78	44.86
CDX74507	Canola	cytosol	45.78	44.86
Solyc04g050550.1.1	Tomato	cytosol	44.06	43.54
AT5G38730.1	Thale cress	cytosol	44.23	43.12
KRH20741	Soybean	cytosol	43.55	43.1
KRH13392	Soybean	cytosol	42.69	42.25
Zm00001d039548_P001	Maize	mitochondrion	21.17	27.09
Zm00001d003294_P001	Maize	plastid	24.1	26.72
Zm00001d042911_P001	Maize	mitochondrion, plastid	18.76	26.59
Zm00001d003397_P001	Maize	endoplasmic reticulum, extracellular	21.17	25.41
Zm00001d003396_P001	Maize	endoplasmic reticulum, extracellular	21.17	25.41
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	22.72	24.58
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	22.55	24.39
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	21.86	24.38
Zm00001d000093_P001	Maize	cytosol	21.0	23.06
Zm00001d030479_P001	Maize	plastid	19.62	22.62
Zm00001d009391_P001	Maize	cytosol	21.86	22.16
Zm00001d027800_P001	Maize	mitochondrion	24.1	21.57
Zm00001d044707_P001	Maize	plastid	25.47	20.79
Zm00001d052540_P001	Maize	plastid	25.47	20.53
Zm00001d045319_P001	Maize	plastid	23.92	20.12
Zm00001d023422_P001	Maize	plastid	24.61	19.97
Zm00001d010121_P001	Maize	plastid	23.75	19.97
Zm00001d048880_P001	Maize	mitochondrion	22.89	19.67
Zm00001d006478_P001	Maize	mitochondrion	24.78	19.33
Zm00001d023302_P001	Maize	mitochondrion	22.89	19.0
Zm00001d020436_P001	Maize	mitochondrion	18.76	17.17
Zm00001d028107_P001	Maize	nucleus	21.0	17.09

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A1D6HQ47	ProteinID:AQK76397.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041
PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF279	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000221C018	EnsemblPlantsGene:Zm00001d018528	EnsemblPlants:Zm00001d018528_P001	EnsemblPlants:Zm00001d018528_T001	SEG:seg

Description

Pentatricopeptide repeat-containing protein

Coordinates

chr5:-:222517401..222520354

Molecular Weight (calculated)

63993.2 Da

IEP (calculated)

9.379

GRAVY (calculated)

-0.052

Length

581 amino acids

Sequence
(BLAST)

001: MAPSLADLSR ELCAAVVKST FRPHLSLLAA SPSLLTAVLH RLSPLPSAAL AFFRALPPPH PLDASLAVLR LLAPHPRHHT AARALLRDLS LRHPLSSPLL
101: LPSLLAGPHV PSWLVLVLAQ SARPHDAVRV FDHMRARGLA PDAHACTALL TALARARMTA TARRVFDEMA RAGLAATTHV YNAMLHVCLK AGDAAQAEAI
201: VTRMDAAGVT LDRFSYNTVI ALYCRKGMGY EAMCARDRMD KEGIRPDTVT WNSSIHGLCK EGRVKEAAQL FTEMVAAQAT PDNVTYTTLI DGYCRAGNVE
301: EAVKLRGRME AAGMLPGVAT YNAILRKLCE DGNMKEVHRL LHEMDGRKVQ ADHVTCNTLI NAYCKRGDMT SACKVKKKMM ESGLQLNHFT YKALIHGFCK
401: ARELDGAKEA FFQMVDAGFS PNYSVFSWLV DGFCKKNNAD AVLAIPDELM KRGLPPDKAV YRSLIRRLCR KGLVDQAQRV FDQMQSKGLV GDSLVYATLA
501: YTYLTKGNPT AALNTLDGMT KNQLYITPQI YNCLCTSYAD EKETLNMLWV RAIERGLIKK SVYKLMHEAR LESTKLTVET G

Best Arabidopsis Sequence Match ( AT5G38730.1 )
(BLAST)

001: MVNLLSANRE ALIAQSICAT VLKGNWKNIL KHKVDSGLLK SAITTQVISE LSLFSGYGGP SLSWSFFIWT DSLPSSKHSL QSSWKMILIL TKHKHFKTAH
101: QLLDKLAQRE LLSSPLVLRS LVGGVSEDPE DVSHVFSWLM IYYAKAGMIN DSIVVFEQIR SCGLKPHLQA CTVLLNSLVK QRLTDTVWKI FKKMVKLGVV
201: ANIHVYNVLV HACSKSGDPE KAEKLLSEME EKGVFPDIFT YNTLISVYCK KSMHFEALSV QDRMERSGVA PNIVTYNSFI HGFSREGRMR EATRLFREIK
301: DDVTANHVTY TTLIDGYCRM NDIDEALRLR EVMESRGFSP GVVTYNSILR KLCEDGRIRE ANRLLTEMSG KKIEPDNITC NTLINAYCKI EDMVSAVKVK
401: KKMIESGLKL DMYSYKALIH GFCKVLELEN AKEELFSMIE KGFSPGYATY SWLVDGFYNQ NKQDEITKLL EEFEKRGLCA DVALYRGLIR RICKLEQVDY
501: AKVLFESMEK KGLVGDSVIF TTMAYAYWRT GKVTEASALF DVMYNRRLMV NLKLYKSISA SYAGDNDVLR FFWSHVGDRC LISKSILREM NRSEVL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g38730 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKR3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.