Factsheet for Zm00001d020436_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96725	Sorghum	mitochondrion, plastid	89.76	89.48
HORVU5Hr1G066340.2	Barley	mitochondrion	69.61	71.29
Os09t0417500-01	Rice	mitochondrion	69.29	71.2
TraesCS5A01G229600.1	Wheat	mitochondrion	69.29	70.97
HORVU0Hr1G013090.3	Barley	cytosol, plastid	62.99	69.08
TraesCS5B01G228400.1	Wheat	plastid	70.24	68.62
TraesCS5D01G237900.1	Wheat	plastid	69.92	67.07
VIT_17s0000g06480.t01	Wine grape	cytosol	17.8	41.54
KRH54581	Soybean	mitochondrion	29.76	35.53
CDX87212	Canola	plastid	35.75	35.41
Bra035931.1-P	Field mustard	mitochondrion	34.49	33.85
AT5G61400.1	Thale cress	mitochondrion	34.65	33.64
Solyc06g069700.2.1	Tomato	plastid	37.48	29.53
Zm00001d039548_P001	Maize	mitochondrion	20.0	27.97
Zm00001d000093_P001	Maize	cytosol	22.36	26.84
Zm00001d042911_P001	Maize	mitochondrion, plastid	17.01	26.34
Zm00001d003294_P001	Maize	plastid	20.79	25.19
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	20.79	24.58
Zm00001d027800_P001	Maize	mitochondrion	25.04	24.5
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	19.84	24.18
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	20.32	24.02
Zm00001d003396_P001	Maize	endoplasmic reticulum, extracellular	17.95	23.55
Zm00001d003397_P001	Maize	endoplasmic reticulum, extracellular	17.95	23.55
Zm00001d044707_P001	Maize	plastid	25.35	22.61
Zm00001d023302_P001	Maize	mitochondrion	24.88	22.57
Zm00001d006478_P001	Maize	mitochondrion	26.3	22.42
Zm00001d052540_P001	Maize	plastid	25.04	22.05
Zm00001d023422_P001	Maize	plastid	24.57	21.79
Zm00001d010121_P001	Maize	plastid	22.36	20.55
Zm00001d045319_P001	Maize	plastid	22.36	20.55
Zm00001d048880_P001	Maize	mitochondrion	20.94	19.67
Zm00001d009391_P001	Maize	cytosol	17.32	19.2
Zm00001d018528_P001	Maize	cytosol	17.17	18.76
Zm00001d030479_P001	Maize	plastid	14.33	18.06
Zm00001d028107_P001	Maize	nucleus	19.53	17.37

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A1D6I463	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	ProteinID:ONM54930.1	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF793	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI00084329C2	EnsemblPlantsGene:Zm00001d020436	EnsemblPlants:Zm00001d020436_P001	EnsemblPlants:Zm00001d020436_T001	SEG:seg

Description

Pentatricopeptide repeat-containing protein

Coordinates

chr7:+:114147175..114149082

Molecular Weight (calculated)

69169.0 Da

IEP (calculated)

7.227

GRAVY (calculated)

0.097

Length

635 amino acids

Sequence
(BLAST)

001: MPPPSTSVRL LFSRRRPNAP HHHLCSRHSL SASGPAAAAA IAPSSRNRAA GLAAAVHGTV AAKNFAQAIR LTKSLVQVSR SFPGRSSAAT AAGAGAAFTA
101: LSSTSTTPAP ALGVLVIALS QMGLLDEALY VFRRLRTLPA LPACNAVLDG LVKARRPGCA WELFDEMLRR GLVPSVVTYN TLINACRFQG TVAKAQEVWD
201: QMVAQQIDPN VVTYTTMICA LCEEGCIGDA ERLFDAMKEA GMQPNQYTYN VLMSGHCQRD DVNSAVVLYQ ELLKSGLNPN AVIFTTLIDG FCKAKRFSEA
301: KGMFLEMPRF GVAPTVPVYN SLMDGAFRSG NAQEALALYQ EMTRLGLCPD EFTCSIVVRG LCDGGQMHVA DRFLQGVQED GVNLNAAAYN ALIDEYCRIG
401: NLEEALATCT RMTEVGIEPN VVSYSSLIDG HSKRGKMQIA MAIYTEMVAK GIEPNVVTYT ALIHGHAKNG GIDAAFRLHK EMIENGISPN AITVSVLVDG
501: LCRENRVQEA VRFVMEYSGL KCSDIHSVFS NFTIEEECLI PNSVIYMTLI YGLYLDGQHC EAGKLFSYMR KSGMIPDSFT YTLLIRGQCM LGYVLNAMML
601: YADMMKIGVK PTRYKIECPE IWSWAPLNDL QTVVS

Best Arabidopsis Sequence Match ( AT5G61400.1 )
(BLAST)

001: MLKLLLPQHR TSVYLFKFQF FNFRFLSQSP SLSNSASSFS SSSLAEAILK CRSAEEAFKL FETSSRSRVS KSNDLQSFSA VIHVLTGAHK YTLARCLIKS
101: LIERLKRHSE PSNMSHRLFN ALEDIQSPKF SIGVFSLLIM EFLEMGLFEE ALWVSREMKC SPDSKACLSI LNGLVRRRRF DSVWVDYQLM ISRGLVPDVH
201: IYFVLFQCCF KQGLYSKKEK LLDEMTSLGI KPNVYIYTIY ILDLCRDNKM EEAEKMFELM KKHGVLPNLY TYSAMIDGYC KTGNVRQAYG LYKEILVAEL
301: LPNVVVFGTL VDGFCKAREL VTARSLFVHM VKFGVDPNLY VYNCLIHGHC KSGNMLEAVG LLSEMESLNL SPDVFTYTIL INGLCIEDQV AEANRLFQKM
401: KNERIFPSSA TYNSLIHGYC KEYNMEQALD LCSEMTASGV EPNIITFSTL IDGYCNVRDI KAAMGLYFEM TIKGIVPDVV TYTALIDAHF KEANMKEALR
501: LYSDMLEAGI HPNDHTFACL VDGFWKEGRL SVAIDFYQEN NQQRSCWNHV GFTCLIEGLC QNGYILRASR FFSDMRSCGI TPDICSYVSM LKGHLQEKRI
601: TDTMMLQCDM IKTGILPNLL VNQLLARFYQ ANGYVKSACF LTNSSRLKTV SNSC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g61400 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLJ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.