Factsheet for TraesCS5A01G229600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G066340.2	Barley	mitochondrion	93.55	93.55
TraesCS5B01G228400.1	Wheat	plastid	96.77	92.31
TraesCS5D01G237900.1	Wheat	plastid	96.45	90.33
HORVU0Hr1G013090.3	Barley	cytosol, plastid	82.9	88.77
Os09t0417500-01	Rice	mitochondrion	73.39	73.62
EER96725	Sorghum	mitochondrion, plastid	71.29	69.39
Zm00001d020436_P001	Maize	mitochondrion	70.97	69.29
VIT_17s0000g06480.t01	Wine grape	cytosol	18.71	42.65
KRH54581	Soybean	mitochondrion	30.16	35.15
CDX87212	Canola	plastid	33.06	31.98
AT5G61400.1	Thale cress	mitochondrion	32.74	31.04
Bra035931.1-P	Field mustard	mitochondrion	32.1	30.76
Solyc06g069700.2.1	Tomato	plastid	38.23	29.4
TraesCS2A01G326700.1	Wheat	plastid	22.26	26.34
TraesCS2A01G114800.1	Wheat	plastid	21.45	24.72
TraesCS3A01G359100.1	Wheat	cytosol	16.29	24.63
TraesCS4A01G023000.1	Wheat	plastid	22.9	24.19
TraesCS1A01G160000.1	Wheat	mitochondrion	18.87	23.59
TraesCS5A01G128400.1	Wheat	plastid	24.84	22.92
TraesCS7A01G360200.1	Wheat	mitochondrion	24.84	22.0
TraesCS2A01G223300.1	Wheat	mitochondrion, plastid	25.0	20.16
TraesCS7A01G109000.1	Wheat	plastid	22.58	20.14
TraesCS2A01G336700.1	Wheat	cytosol	19.68	20.03
TraesCS4A01G045400.1	Wheat	plastid	23.87	19.76
TraesCS3A01G201500.1	Wheat	cytosol, extracellular, mitochondrion, plastid	18.23	19.72
TraesCS6A01G371200.1	Wheat	plastid	18.06	18.76
TraesCS7A01G134800.1	Wheat	mitochondrion	20.32	18.75
TraesCS2A01G339000.1	Wheat	cytosol	13.55	15.3

Protein Annotations

EnsemblPlants:TraesCS5A01G229600.1	EnsemblPlantsGene:TraesCS5A01G229600	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF793
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr5A:-:445197608..445199470

Molecular Weight (calculated)

67475.9 Da

IEP (calculated)

8.238

GRAVY (calculated)

0.060

Length

620 amino acids

Sequence
(BLAST)

001: MPLSPPLRLI LSSRRRPLAT RHRCLSSAAA AVAAATPATS RDRAAHLAAA VHGSAAAKNF AHAIRLTKSL VQASSPGARP GAAAFAALAS SSTSPGPALG
101: VLVIALSQMA LHDEALSVFH RLPTLPALPA CNAVLDVLVR AHRFDRVWKL FDEMLSRGMT PTVVTYNTLI NACRHEGAVA KAREVWKQMA ARRIGPNVVT
201: YSTMISALCD EGCIAEAERL FLTMKQTGMR PNHYTYNALM SSHCKRDGVK RALTLYQELL KSGLVPNAVI FTTLIDGFFQ VNRISDAKNI FLDMHRYGVA
301: PTVPVYNSLI DGAFRSGDSQ EALTVYEDMA RLGLCPDEFT CSIIVRGLCS GGQVQVAARF LEAMQQSGVY LNAAAYNALI DEYCKNGDLA EALATCTIMS
401: EVGIEPNVVT YSSLIDGHSR KGKMEIAMAI YTEMIAKGVE PNVLTYTALI HGHAKDGDIN AAFRLQKEMA EKGISPNSVT VSVLVDGLCR ENRIQDAVMI
501: FMKHSGQKKH ADIRTCLSNS TTEEDHSIPN SVTYMTLIYG LYLDGQYREA GKFFSCMRES GMVPDSFTYS LLIRGQCMLG YVLNAMMLYA DMVKVGVKPM
601: TVCPDIWSRD ASNDLKTVET

Best Arabidopsis Sequence Match ( AT5G61400.1 )
(BLAST)

001: MLKLLLPQHR TSVYLFKFQF FNFRFLSQSP SLSNSASSFS SSSLAEAILK CRSAEEAFKL FETSSRSRVS KSNDLQSFSA VIHVLTGAHK YTLARCLIKS
101: LIERLKRHSE PSNMSHRLFN ALEDIQSPKF SIGVFSLLIM EFLEMGLFEE ALWVSREMKC SPDSKACLSI LNGLVRRRRF DSVWVDYQLM ISRGLVPDVH
201: IYFVLFQCCF KQGLYSKKEK LLDEMTSLGI KPNVYIYTIY ILDLCRDNKM EEAEKMFELM KKHGVLPNLY TYSAMIDGYC KTGNVRQAYG LYKEILVAEL
301: LPNVVVFGTL VDGFCKAREL VTARSLFVHM VKFGVDPNLY VYNCLIHGHC KSGNMLEAVG LLSEMESLNL SPDVFTYTIL INGLCIEDQV AEANRLFQKM
401: KNERIFPSSA TYNSLIHGYC KEYNMEQALD LCSEMTASGV EPNIITFSTL IDGYCNVRDI KAAMGLYFEM TIKGIVPDVV TYTALIDAHF KEANMKEALR
501: LYSDMLEAGI HPNDHTFACL VDGFWKEGRL SVAIDFYQEN NQQRSCWNHV GFTCLIEGLC QNGYILRASR FFSDMRSCGI TPDICSYVSM LKGHLQEKRI
601: TDTMMLQCDM IKTGILPNLL VNQLLARFYQ ANGYVKSACF LTNSSRLKTV SNSC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g61400 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLJ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.