CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020436_P001	Maize	mitochondrion	89.48	89.76
Os09t0417500-01	Rice	mitochondrion	69.39	71.52
TraesCS5A01G229600.1	Wheat	mitochondrion	69.39	71.29
HORVU5Hr1G066340.2	Barley	mitochondrion	69.07	70.97
TraesCS5B01G228400.1	Wheat	plastid	70.33	68.92
HORVU0Hr1G013090.3	Barley	cytosol, plastid	62.48	68.74
TraesCS5D01G237900.1	Wheat	plastid	69.86	67.22
VIT_17s0000g06480.t01	Wine grape	cytosol	17.11	40.07
KRH54581	Soybean	mitochondrion	29.67	35.53
CDX87212	Canola	plastid	34.54	34.32
Bra035931.1-P	Field mustard	mitochondrion	33.91	33.38
AT5G61400.1	Thale cress	mitochondrion	33.75	32.87
Solyc06g069700.2.1	Tomato	plastid	36.73	29.03
KXG40115	Sorghum	cytosol	19.31	28.47
OQU90004	Sorghum	cytosol	21.04	28.21
KXG31660	Sorghum	mitochondrion	15.07	28.07
OQU81794	Sorghum	mitochondrion, peroxisome	17.74	28.04
EER99880	Sorghum	cytosol	19.15	25.52
OQU87837	Sorghum	plastid	16.01	24.88
OQU75844	Sorghum	cytosol	19.15	22.14
OQU78719	Sorghum	cytosol	25.59	21.34
EES09272	Sorghum	plastid	24.18	21.18
OQU83816	Sorghum	mitochondrion	13.66	19.59
EES00885	Sorghum	cytosol, mitochondrion	17.27	19.2
EES10956	Sorghum	mitochondrion	18.37	19.06
KXG39937	Sorghum	cytosol, plastid	21.82	17.51
EES07796	Sorghum	cytosol, endoplasmic reticulum, extracellular	16.48	17.5
KXG22891	Sorghum	mitochondrion	15.86	17.27

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8060236	UniProt:C5XC86	EnsemblPlants:EER96725	ProteinID:EER96725
ProteinID:EER96725.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF12854	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF793	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3002G198900	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A83B20	RefSeq:XP_002460204.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:58868402..58870315

Molecular Weight (calculated)

69929.7 Da

IEP (calculated)

7.466

GRAVY (calculated)

0.038

Length

637 amino acids

Sequence
(BLAST)

001: MPPSSPSLRL FFSRRRPIAP HHQHHLRRRH SLSASGPAAA AAVPPPSRNR AARLAAAVHG AVASKNFAHA IRLTKSLVQV PTSFPGRSSA STAAGAGAAF
101: AALSSTSASP APALGVLVIA LSQMGLLDEA LYVFRRLWTL PALPACNAVL DGLVKARRSR CAWELFDEML RRGMVPSVVT YNTLINACRY QGAVAKAQEM
201: WDQMVARQID PNVITYTSMI CVLCEEGCIG DAERLFDAMK EAGMRPNQYT YNVLMSGHCQ GDDVNSAFVL YQELLNSGLI PNAVVFTTLI DGFCKAKRFS
301: EAKDMFRDMP RFGVAPTVPV YNSLMDGAFR SGDAQEALSL YQEMTRLGLC PDEFTCSIVV RGLCDGGQIQ VAARFLEGVR EDGVNLNAAA YNALIDEYCR
401: NGNLEEALAT CTRMTEVGVE PNVVSYSSLI DGHSKLGKMQ IAMAIYTEMV AKGIEPNVVT YTALIHGHAK NGGIDAAFRF HKEMIENGIS PNAITVSVLV
501: DGLCRENRVQ DAVRFVMEHS GIKYSDIHSF FSNFTTEEEP LIPNSAIYMT LIYGLYLDGQ HYEAGKLFSY MRKSGMISDS FTYTLLIRGQ CMLGYVLNAM
601: MLYADMMKIG VKPMRYKIIC PEIWSWEPLN DPQTVVS

Best Arabidopsis Sequence Match ( AT5G61400.1 )
(BLAST)

001: MLKLLLPQHR TSVYLFKFQF FNFRFLSQSP SLSNSASSFS SSSLAEAILK CRSAEEAFKL FETSSRSRVS KSNDLQSFSA VIHVLTGAHK YTLARCLIKS
101: LIERLKRHSE PSNMSHRLFN ALEDIQSPKF SIGVFSLLIM EFLEMGLFEE ALWVSREMKC SPDSKACLSI LNGLVRRRRF DSVWVDYQLM ISRGLVPDVH
201: IYFVLFQCCF KQGLYSKKEK LLDEMTSLGI KPNVYIYTIY ILDLCRDNKM EEAEKMFELM KKHGVLPNLY TYSAMIDGYC KTGNVRQAYG LYKEILVAEL
301: LPNVVVFGTL VDGFCKAREL VTARSLFVHM VKFGVDPNLY VYNCLIHGHC KSGNMLEAVG LLSEMESLNL SPDVFTYTIL INGLCIEDQV AEANRLFQKM
401: KNERIFPSSA TYNSLIHGYC KEYNMEQALD LCSEMTASGV EPNIITFSTL IDGYCNVRDI KAAMGLYFEM TIKGIVPDVV TYTALIDAHF KEANMKEALR
501: LYSDMLEAGI HPNDHTFACL VDGFWKEGRL SVAIDFYQEN NQQRSCWNHV GFTCLIEGLC QNGYILRASR FFSDMRSCGI TPDICSYVSM LKGHLQEKRI
601: TDTMMLQCDM IKTGILPNLL VNQLLARFYQ ANGYVKSACF LTNSSRLKTV SNSC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g61400 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLJ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.