Factsheet for Os09t0417500-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G066340.2	Barley	mitochondrion	73.95	73.71
TraesCS5A01G229600.1	Wheat	mitochondrion	73.62	73.39
HORVU0Hr1G013090.3	Barley	cytosol, plastid	66.5	70.98
TraesCS5B01G228400.1	Wheat	plastid	74.6	70.92
EER96725	Sorghum	mitochondrion, plastid	71.52	69.39
Zm00001d020436_P001	Maize	mitochondrion	71.2	69.29
TraesCS5D01G237900.1	Wheat	plastid	74.11	69.18
VIT_17s0000g06480.t01	Wine grape	cytosol	17.31	39.34
KRH54581	Soybean	mitochondrion	30.26	35.15
CDX87212	Canola	plastid	33.82	32.61
AT5G61400.1	Thale cress	mitochondrion	33.82	31.96
Bra035931.1-P	Field mustard	mitochondrion	32.85	31.38
Solyc06g069700.2.1	Tomato	plastid	37.7	28.91
Os04t0477200-01	Rice	endoplasmic reticulum	19.09	25.93
Os05t0583950-00	Rice	mitochondrion	16.5	24.88
Os07t0671200-00	Rice	extracellular	20.87	23.41
Os10t0484300-01	Rice	mitochondrion	21.68	23.18
Os06t0565000-00	Rice	mitochondrion	25.4	22.62
Os12t0152600-01	Rice	plastid	25.57	22.07
Os04t0463300-01	Rice	cytosol	2.43	21.43
Os06t0152500-00	Rice	plastid	23.62	21.04
Os07t0513200-01	Rice	mitochondrion	25.24	20.69
Os03t0165100-00	Rice	cytosol, mitochondrion	23.95	20.33
Os02t0827900-03	Rice	plastid	18.61	19.83
Os01t0546700-00	Rice	cytosol	18.28	18.96
Os11t0607100-01	Rice	mitochondrion	20.39	18.78
Os03t0201400-02	Rice	cytosol	23.95	18.59
Os10t0363500-00	Rice	endoplasmic reticulum	14.24	17.19
Os03t0201200-01	Rice	nucleus	1.13	3.0

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:4347068	ProteinID:BAD29277.1	ProteinID:BAF25097.1	ProteinID:BAT08098.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os09g0417500
EnsemblPlants:Os09t0417500-01	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF793	InterPro:Pentatricopeptide_repeat	UniProt:Q6EPZ3	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI00003CE92E	RefSeq:XP_015610781.1	RefSeq:XP_015610782.1	RefSeq:XP_015610783.1	SEG:seg	:

Description

Pentatricopeptide repeat domain containing protein. (Os09t0417500-01)

Coordinates

chr9:+:14971348..14975334

Molecular Weight (calculated)

67727.2 Da

IEP (calculated)

6.888

GRAVY (calculated)

0.093

Length

618 amino acids

Sequence
(BLAST)

001: MPPSPPLRHL LSFRRRPLAP RFLLLPRRFS ASASASALQA ATPPPSSSSA ARLAAAVHGS AASGDFAHAI RLTKHLVRAS SSPSHRPGAA GAAAAAALAS
101: TSASPAPALG VLVIALSQMA LPDEALSVFG RLRELPALPA CNAILDGLVK AHMLARVWEL FDEMLGRGMV PSVVTYNTLI NACRHQGDVA KAWEVWDQMV
201: ARRIDPNVVT YTTMICALCE EDCIGDAEGL FLEMKEAGMR PNLYTYNALM SSHFKRDNIK HALVFYYDLL KCGLVPNDVI FTTLIDGLCQ ANRITEAKNI
301: FLDMPRYEVA PTVPVYNSLI HGAFRSGYAQ EALAFFQEII RKGLRPDEFT CSIVVRGLCD GGQMQVATRF LEVMQQSGIA LNAAAYNVLI DEYCKSGNLD
401: EALVTCTRMS EVGVEPNVVT YSSLIDGHSK NGEMEIAMAI YTEMVAKGVE PNVVTYTALI HGHAKNGDMD AAFWLQKEME EKGIYSNAIT VSVLVDGLCR
501: ENRVQDAVRF IMEYSGQKKS EKNPSIANSV TYMTLIYGLY IDGQYNEACH FFSCMRDSGM VPDRFTYTLV IRGLCMLGYV LNAMMLYADM VKVGVKPTKC
601: AMVCPDIWSR ESVDHRMT

Best Arabidopsis Sequence Match ( AT5G61400.1 )
(BLAST)

001: MLKLLLPQHR TSVYLFKFQF FNFRFLSQSP SLSNSASSFS SSSLAEAILK CRSAEEAFKL FETSSRSRVS KSNDLQSFSA VIHVLTGAHK YTLARCLIKS
101: LIERLKRHSE PSNMSHRLFN ALEDIQSPKF SIGVFSLLIM EFLEMGLFEE ALWVSREMKC SPDSKACLSI LNGLVRRRRF DSVWVDYQLM ISRGLVPDVH
201: IYFVLFQCCF KQGLYSKKEK LLDEMTSLGI KPNVYIYTIY ILDLCRDNKM EEAEKMFELM KKHGVLPNLY TYSAMIDGYC KTGNVRQAYG LYKEILVAEL
301: LPNVVVFGTL VDGFCKAREL VTARSLFVHM VKFGVDPNLY VYNCLIHGHC KSGNMLEAVG LLSEMESLNL SPDVFTYTIL INGLCIEDQV AEANRLFQKM
401: KNERIFPSSA TYNSLIHGYC KEYNMEQALD LCSEMTASGV EPNIITFSTL IDGYCNVRDI KAAMGLYFEM TIKGIVPDVV TYTALIDAHF KEANMKEALR
501: LYSDMLEAGI HPNDHTFACL VDGFWKEGRL SVAIDFYQEN NQQRSCWNHV GFTCLIEGLC QNGYILRASR FFSDMRSCGI TPDICSYVSM LKGHLQEKRI
601: TDTMMLQCDM IKTGILPNLL VNQLLARFYQ ANGYVKSACF LTNSSRLKTV SNSC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g61400 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLJ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.