Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES00885 | Sorghum | cytosol, mitochondrion | 76.68 | 79.76 |
| Zm00001d009391_P001 | Maize | cytosol | 75.67 | 78.71 |
| TraesCS3D01G203500.2 | Wheat | cytosol, mitochondrion | 75.5 | 78.53 |
| TraesCS3B01G225400.1 | Wheat | cytosol, mitochondrion | 75.0 | 78.01 |
| TraesCS3A01G201500.1 | Wheat | cytosol, extracellular, mitochondrion, plastid | 74.83 | 77.84 |
| HORVU5Hr1G009510.3 | Barley | cytosol | 75.34 | 76.1 |
| GSMUA_Achr5P09880_001 | Banana | mitochondrion | 43.96 | 39.22 |
| Os04t0477200-01 | Rice | endoplasmic reticulum | 18.46 | 24.18 |
| Os10t0484300-01 | Rice | mitochondrion | 22.99 | 23.7 |
| Os02t0827900-03 | Rice | plastid | 21.64 | 22.24 |
| Os10t0363500-00 | Rice | endoplasmic reticulum | 18.96 | 22.07 |
| Os05t0583950-00 | Rice | mitochondrion | 15.1 | 21.95 |
| Os06t0152500-00 | Rice | plastid | 23.49 | 20.17 |
| Os07t0671200-00 | Rice | extracellular | 18.12 | 19.6 |
| Os06t0565000-00 | Rice | mitochondrion | 22.65 | 19.45 |
| Os04t0463300-01 | Rice | cytosol | 2.18 | 18.57 |
| Os09t0417500-01 | Rice | mitochondrion | 18.96 | 18.28 |
| Os03t0201400-02 | Rice | cytosol | 23.49 | 17.59 |
| Os07t0513200-01 | Rice | mitochondrion | 21.81 | 17.24 |
| Os11t0607100-01 | Rice | mitochondrion | 19.3 | 17.14 |
| Os12t0152600-01 | Rice | plastid | 20.47 | 17.04 |
| Os03t0165100-00 | Rice | cytosol, mitochondrion | 20.64 | 16.9 |
| Os03t0201200-01 | Rice | nucleus | 2.18 | 5.58 |
Protein Annotations
| EnsemblPlants:Os01t0546700-00 | EnsemblPlantsGene:Os01g0546700 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF657 |
| PFAM:PF01535 | PFAM:PF12854 | PFAM:PF13041 | PFscan:PS51375 | ProteinID:BAS72601.1 | ProteinID:EAZ12271.1 |
| SEG:seg | TIGRFAMs:TIGR00756 | UniParc:UPI00000A670E | UniProt:A2ZU74 | MapMan:35.1 | : |
Description
Hypothetical conserved gene. (Os01t0546700-00)
Coordinates
chr1:+:20314316..20316106
Molecular Weight (calculated)
65038.8 Da
IEP (calculated)
6.589
GRAVY (calculated)
0.102
Length
596 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVSRIPPST LTSLLPRALN PRVAVVDLVA GHLTASDAPD EARPIEDELS RLLPYLGSDE LTAVVLRAGH SHPLPTLRFL LALPPPAQPS PTHLAFLAGS
101: LASSRLFSQA LDALSHLLRL HPGHDALPTL LRSSATAPHP SLPGLLVKAL LRHARLRDAL RAALRATAAG APPDAAAFNA LLAALSRAGR FDDLWAARAV
201: MARAGVRPNA HTFNILVAAL CRGEDAERAQ GFLEELEEQG FEPDGVTYNT LLSGYCRRGR LQDALHLFDV MPYRRVQPDL VSHTVVMDAL CKAGRVRDAR
301: RMFDRMIQSG LSPDAVAYSV LIAGYCNEGR LREARFLLME MVGCGFSSEG FALKVVVESH VKFSKLLTCL NMVAPIRKHG VVIPSQSYSC LIGALCEDMR
401: PNAARGLLHW MIEDGHSPSL AIYNMIIECF CQCDIVEEAL DVKVEMISRE VRLDFNTYRA LITCFCRLGR SLDGESIMAE MIESGFQPNE AICSALVCGF
501: CKEGALNRAE LILRAFVLDF HVHCNESYNA LMRAYCETTS SKESLELQNR MLELGFVPNS ETCRSLILGL SKSIDLVSSD DGFSCISSKD NGGNAE
101: LASSRLFSQA LDALSHLLRL HPGHDALPTL LRSSATAPHP SLPGLLVKAL LRHARLRDAL RAALRATAAG APPDAAAFNA LLAALSRAGR FDDLWAARAV
201: MARAGVRPNA HTFNILVAAL CRGEDAERAQ GFLEELEEQG FEPDGVTYNT LLSGYCRRGR LQDALHLFDV MPYRRVQPDL VSHTVVMDAL CKAGRVRDAR
301: RMFDRMIQSG LSPDAVAYSV LIAGYCNEGR LREARFLLME MVGCGFSSEG FALKVVVESH VKFSKLLTCL NMVAPIRKHG VVIPSQSYSC LIGALCEDMR
401: PNAARGLLHW MIEDGHSPSL AIYNMIIECF CQCDIVEEAL DVKVEMISRE VRLDFNTYRA LITCFCRLGR SLDGESIMAE MIESGFQPNE AICSALVCGF
501: CKEGALNRAE LILRAFVLDF HVHCNESYNA LMRAYCETTS SKESLELQNR MLELGFVPNS ETCRSLILGL SKSIDLVSSD DGFSCISSKD NGGNAE
001: MKNLVSNLRF FSSYSSSIVP RCSNIPKPIL NPLYNLLPQS QNPSKIVDVI CSTLNHSDYS VLLPNLRDEV KSLIPHLGYP EISRVLLRFQ SDASRAITFF
101: KWVKFDLGKR PNVGNYCLLL HILVSSKKFP LAMQFLCELI ELTSKKEEVD VFRVLVSATD ECNWDPVVFD MLVKGYLKLG LVEEGFRVFR EVLDSGFSVS
201: VVTCNHLLNG LLKLDLMEDC WQVYSVMCRV GIHPNTYTFN ILTNVFCNDS NFREVDDFLE KMEEEGFEPD LVTYNTLVSS YCRRGRLKEA FYLYKIMYRR
301: RVVPDLVTYT SLIKGLCKDG RVREAHQTFH RMVDRGIKPD CMSYNTLIYA YCKEGMMQQS KKLLHEMLGN SVVPDRFTCK VIVEGFVREG RLLSAVNFVV
401: ELRRLKVDIP FEVCDFLIVS LCQEGKPFAA KHLLDRIIEE EGHEAKPETY NNLIESLSRC DAIEEALVLK GKLKNQNQVL DAKTYRALIG CLCRIGRNRE
501: AESLMAEMFD SEVKPDSFIC GALVYGYCKE LDFDKAERLL SLFAMEFRIF DPESYNSLVK AVCETGCGYK KALELQERMQ RLGFVPNRLT CKYLIQVLEQ
601: PSLPNHLPEN
101: KWVKFDLGKR PNVGNYCLLL HILVSSKKFP LAMQFLCELI ELTSKKEEVD VFRVLVSATD ECNWDPVVFD MLVKGYLKLG LVEEGFRVFR EVLDSGFSVS
201: VVTCNHLLNG LLKLDLMEDC WQVYSVMCRV GIHPNTYTFN ILTNVFCNDS NFREVDDFLE KMEEEGFEPD LVTYNTLVSS YCRRGRLKEA FYLYKIMYRR
301: RVVPDLVTYT SLIKGLCKDG RVREAHQTFH RMVDRGIKPD CMSYNTLIYA YCKEGMMQQS KKLLHEMLGN SVVPDRFTCK VIVEGFVREG RLLSAVNFVV
401: ELRRLKVDIP FEVCDFLIVS LCQEGKPFAA KHLLDRIIEE EGHEAKPETY NNLIESLSRC DAIEEALVLK GKLKNQNQVL DAKTYRALIG CLCRIGRNRE
501: AESLMAEMFD SEVKPDSFIC GALVYGYCKE LDFDKAERLL SLFAMEFRIF DPESYNSLVK AVCETGCGYK KALELQERMQ RLGFVPNRLT CKYLIQVLEQ
601: PSLPNHLPEN
Arabidopsis Description
Pentatricopeptide repeat (PPR) superfamily protein [Source:TAIR;Acc:AT5G40400]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.