Factsheet for Os07t0671200-00

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 5
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 25047395

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G019920.1	Barley	cytosol	54.99	81.02
TraesCS2A01G114800.1	Wheat	plastid	77.68	79.55
TraesCS2B01G133900.1	Wheat	plastid	76.95	78.81
EER99880	Sorghum	cytosol	68.24	78.66
Zm00001d007125_P001	Maize	endoplasmic reticulum, plastid	74.95	76.91
Zm00001d007127_P001	Maize	endoplasmic reticulum, plastid	71.14	75.24
Zm00001d007129_P001	Maize	endoplasmic reticulum, plastid	73.32	75.23
TraesCS2D01G115600.1	Wheat	cytosol, plastid	77.5	72.99
HORVU2Hr1G019880.2	Barley	cytosol	42.83	65.56
GSMUA_Achr11P...	Banana	cytosol	49.18	55.19
KRH33556	Soybean	cytosol	15.61	41.15
VIT_08s0040g01530.t01	Wine grape	cytosol	45.55	40.48
PGSC0003DMT400027103	Potato	cytosol	29.58	39.85
Solyc10g084080.1.1	Tomato	cytosol, extracellular	34.48	37.04
CDX79463	Canola	plastid	40.65	36.3
CDX84733	Canola	plastid	40.11	35.99
Bra022891.1-P	Field mustard	plastid	40.11	35.99
KRG90304	Soybean	cytosol	36.3	35.65
AT2G32630.1	Thale cress	mitochondrion, plastid	39.38	34.78
Os04t0463300-01	Rice	cytosol	3.63	28.57
Os05t0583950-00	Rice	mitochondrion	21.23	28.54
Os04t0477200-01	Rice	endoplasmic reticulum	22.69	27.47
Os10t0484300-01	Rice	mitochondrion	26.5	25.26
KRG93154	Soybean	plastid	41.38	23.87
PGSC0003DMT400027098	Potato	cytosol	26.5	23.62
PGSC0003DMT400027113	Potato	cytosol, plastid	42.47	23.17
AT2G28050.1	Thale cress	cytosol, plastid	18.87	22.51
Os06t0152500-00	Rice	plastid	27.4	21.76
Os06t0565000-00	Rice	mitochondrion	27.22	21.61
PGSC0003DMT400040701	Potato	mitochondrion	21.42	21.45
Os02t0827900-03	Rice	plastid	22.5	21.38
Os09t0417500-01	Rice	mitochondrion	23.41	20.87
Os11t0607100-01	Rice	mitochondrion	25.05	20.57
Os10t0363500-00	Rice	endoplasmic reticulum	18.69	20.12
Solyc06g010270.1.1	Tomato	mitochondrion	16.52	19.65
Os03t0165100-00	Rice	cytosol, mitochondrion	25.59	19.37
Os12t0152600-01	Rice	plastid	24.68	18.99
Os01t0546700-00	Rice	cytosol	19.6	18.12
Solyc10g084090.1.1	Tomato	cytosol	43.92	18.1
Os03t0201400-02	Rice	cytosol	24.68	17.09
Os07t0513200-01	Rice	mitochondrion	21.96	16.05
Os03t0201200-01	Rice	nucleus	1.63	3.86

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:4344245	ProteinID:BAC15987.1	ProteinID:BAF22511.1	ProteinID:BAT03154.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005506	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016705
GO:GO:0016787	GO:GO:0020037	GO:GO:0043231	GO:GO:0055114	GO:GO:0090305	InterPro:IPR002885
InterPro:IPR011990	EnsemblPlantsGene:Os07g0671200	EnsemblPlants:Os07t0671200-00	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF418	InterPro:Pentatricopeptide_repeat	UniProt:Q8H473	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI00000AD72D	RefSeq:XP_015647917.1	RefSeq:XP_015647918.1	SEG:seg	:

Description

Pentatricopeptide repeat domain containing protein. (Os07t0671200-00)

Coordinates

chr7:-:28373368..28375043

Molecular Weight (calculated)

60091.4 Da

IEP (calculated)

6.839

GRAVY (calculated)

-0.113

Length

551 amino acids

Sequence
(BLAST)

001: MASDSESPAA AAAPAKLPAT PLAGFVSLLA ARRFAAAKSL LASLVTPRLL AVPFADLAAA SLPRAAPRHA VTAFYDMLFR AYADSGAAAR AAEAFELTVS
101: RLGGLDPRSL TSSLLSLRRA GHLDTAADLL KQAATSCPDS VTPLSASVVV DGYCKSGRVA HARQLLDEMP RHGVKVNALC YNSLLDAYTR EKDDDRVAEM
201: LKVMENEGIE PTVGTYTILV DGLSAARDIT KVEAVFEEMK SKNLSGDVYF YSSVINAYCR AGNVRRASEV FDECVGNGIE PNEHTYGALI NGFCKIGQME
301: AAEMLVTDMQ VRGVGINQIV FNTMIDGYCR KNMVDKALEI KMIMEKMGIE LDVYTYNTLA CGLRRANRMD EAKNLLRIMI EKGVRPNHVS YTTLISIHCN
401: EGDMVEARRL FREMAGNGAE PSLVTYNVMM DGYIKKGSIR EAERFKNEME KKGLVPDIYS YAALVHGHCV NGKVDVALRL FEEMKQRGSK PNLVAYTALI
501: SGLAKEGRSE EAFQLYDNML GDGLTPDDAL YSALVGSLHT DKKQNVKPRT N

Best Arabidopsis Sequence Match ( AT2G32630.1 )
(BLAST)

001: MNMSSSSRKL SRLFNIVTQN QKSPVLLSSD QEAARRITAC LVEKSTIGKL QSNPSLLFNL NSNVTRLVLS EPTLPTQSCI DFFKLLREFE SNLKPDLTAV
101: VTLSHRLYSN RRFNEMRSLL NSVVNDGFYK RPVEELGSAM VDCDISEEKF EFFEKFFDLV FRVYVDNGMF EEGLRVFDYM VKKGLSIDER SCIVFLVAAK
201: KRRRIDLCLE IFRRMVDSGV KITVYSLTIV VEGLCRRGEV EKSKKLIKEF SVKGIKPEAY TYNTIINAYV KQRDFSGVEG VLKVMKKDGV VYNKVTYTLL
301: MELSVKNGKM SDAEKLFDEM RERGIESDVH VYTSLISWNC RKGNMKRAFL LFDELTEKGL SPSSYTYGAL IDGVCKVGEM GAAEILMNEM QSKGVNITQV
401: VFNTLIDGYC RKGMVDEASM IYDVMEQKGF QADVFTCNTI ASCFNRLKRY DEAKQWLFRM MEGGVKLSTV SYTNLIDVYC KEGNVEEAKR LFVEMSSKGV
501: QPNAITYNVM IYAYCKQGKI KEARKLRANM EANGMDPDSY TYTSLIHGEC IADNVDEAMR LFSEMGLKGL DQNSVTYTVM ISGLSKAGKS DEAFGLYDEM
601: KRKGYTIDNK VYTALIGSMH SPET

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g32630 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8P6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.