Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84733 | Canola | plastid | 94.65 | 95.11 |
| AT2G32630.1 | Thale cress | mitochondrion, plastid | 80.71 | 79.81 |
| VIT_08s0040g01530.t01 | Wine grape | cytosol | 50.24 | 50.0 |
| HORVU2Hr1G019920.1 | Barley | cytosol | 28.36 | 46.79 |
| GSMUA_Achr11P... | Banana | cytosol | 34.85 | 43.79 |
| KRG90304 | Soybean | cytosol | 39.38 | 43.32 |
| KRH33556 | Soybean | cytosol | 14.59 | 43.06 |
| EER99880 | Sorghum | cytosol | 32.25 | 41.63 |
| Os07t0671200-00 | Rice | extracellular | 36.3 | 40.65 |
| PGSC0003DMT400027103 | Potato | cytosol | 26.74 | 40.34 |
| TraesCS2B01G133900.1 | Wheat | plastid | 34.85 | 39.96 |
| TraesCS2A01G114800.1 | Wheat | plastid | 34.85 | 39.96 |
| Zm00001d007125_P001 | Maize | endoplasmic reticulum, plastid | 34.04 | 39.11 |
| Zm00001d007129_P001 | Maize | endoplasmic reticulum, plastid | 33.55 | 38.55 |
| Zm00001d007127_P001 | Maize | endoplasmic reticulum, plastid | 32.41 | 38.39 |
| HORVU2Hr1G019880.2 | Barley | cytosol | 22.37 | 38.33 |
| Solyc10g084080.1.1 | Tomato | cytosol, extracellular | 31.6 | 38.01 |
| TraesCS2D01G115600.1 | Wheat | cytosol, plastid | 35.17 | 37.09 |
| KRG93154 | Soybean | plastid | 46.68 | 30.16 |
| PGSC0003DMT400027098 | Potato | cytosol | 26.74 | 26.7 |
| PGSC0003DMT400027113 | Potato | cytosol, plastid | 42.46 | 25.94 |
| CDY51888 | Canola | cytosol, mitochondrion, plastid | 19.94 | 24.9 |
| CDX86757 | Canola | endoplasmic reticulum, extracellular | 23.01 | 24.7 |
| CDX78962 | Canola | cytosol | 19.45 | 24.24 |
| CDX94941 | Canola | cytosol, plastid | 24.15 | 24.23 |
| CDX93473 | Canola | mitochondrion | 23.99 | 24.18 |
| CDY57780 | Canola | endoplasmic reticulum | 22.53 | 24.17 |
| CDY36644 | Canola | mitochondrion | 24.8 | 24.17 |
| CDX71231 | Canola | mitochondrion | 24.15 | 23.61 |
| CDX74507 | Canola | cytosol | 22.37 | 23.27 |
| CDY67116 | Canola | cytosol | 22.37 | 23.27 |
| CDX93490 | Canola | mitochondrion | 21.88 | 22.5 |
| CDX87212 | Canola | plastid | 23.01 | 22.15 |
| CDY17611 | Canola | cytosol | 21.23 | 22.09 |
| CDX94959 | Canola | mitochondrion | 21.72 | 22.04 |
| CDY47261 | Canola | plastid | 25.77 | 21.81 |
| Solyc10g084090.1.1 | Tomato | cytosol | 46.84 | 21.62 |
| CDY04100 | Canola | plastid | 16.05 | 21.57 |
| CDY30265 | Canola | mitochondrion | 25.45 | 21.51 |
| CDX94295 | Canola | cytosol | 6.16 | 21.47 |
| CDY49798 | Canola | mitochondrion | 22.37 | 21.26 |
| CDY17453 | Canola | mitochondrion | 15.72 | 21.13 |
| CDY10136 | Canola | cytosol | 12.48 | 21.04 |
| CDX74435 | Canola | mitochondrion | 25.28 | 20.94 |
| CDY21405 | Canola | cytosol | 13.94 | 20.33 |
| CDY11211 | Canola | mitochondrion | 23.99 | 19.97 |
| CDY03072 | Canola | mitochondrion | 23.66 | 19.84 |
| CDY50117 | Canola | plastid | 19.94 | 19.74 |
| CDY04764 | Canola | cytosol | 11.18 | 19.49 |
| CDY42586 | Canola | plastid | 19.45 | 19.35 |
| CDY04753 | Canola | mitochondrion, plastid | 12.97 | 19.23 |
| CDY04754 | Canola | cytosol | 7.46 | 19.01 |
| CDX94298 | Canola | mitochondrion | 17.02 | 18.45 |
| CDX80791 | Canola | mitochondrion | 17.83 | 18.3 |
| CDY39141 | Canola | mitochondrion | 20.42 | 18.21 |
| CDY31404 | Canola | cytosol | 21.56 | 17.95 |
| CDX82665 | Canola | mitochondrion, plastid | 20.1 | 17.89 |
| CDX71311 | Canola | cytosol | 19.29 | 17.02 |
| CDX89313 | Canola | mitochondrion | 17.83 | 8.13 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EnsemblPlants:CDX79463 | ProteinID:CDX79463 | ProteinID:CDX79463.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00132204001 | InterPro:IPR002885 | InterPro:IPR011990 | PFAM:PF01535 |
| PFAM:PF12854 | PFAM:PF13041 | PFAM:PF13812 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF418 |
| InterPro:Pentatricopeptide_repeat | SUPFAM:SSF48452 | SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0004EE0451 |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g17990D
Coordinates
chrLK031818:+:214304..216157
Molecular Weight (calculated)
69885.1 Da
IEP (calculated)
8.562
GRAVY (calculated)
-0.206
Length
617 amino acids
Sequence
(BLAST)
(BLAST)
001: MNKQIKTMSS AKLSRLFNIT SKNQTPCPLP ISDKQAGARI TTYLQKSTVG KLQSNPSLLF NLNPNVTRLV LSSPSLPTQS CVDFFKLLNT FESHLKPDLA
101: AAIALSHRLY TDRRFREMKS LLNSISTDGA EIIGSVYVYE GKVEFLETLF DLMIRVYVDK GMFQEGLKVF DYMVEKGMKI DERSCIVFLV AAKKRLEIDL
201: CLEIFKRMVD CGVRITVYSL TIVVEGLCRR GEVEKSRKLV REFNRKGIKP EAYTYNTIIN AYVKVRDFSG VEEVLKEMRK GGVGYNKVTY TLLMELSVKN
301: GRMGDAEKLF DEMRERGVEL DVYLYTSMIS LYCRKGNVKR AFLLFDELVE KGLSPSSHTY GALIDGVCKV GEMGAAEILM NEMQSRGVDI TQVVFNTLIN
401: GYCRKRMIDE ALMIYDVMEK KGFEADVFTF NTIASCLNRL KRYDEAKEWI FRMMEGGVRL NTVSYTNLID VYCKEGNIEE AKRLFVEMSS KGSQPNAITY
501: NVKIDACCKQ GKVKEARKLR ADMEAKGMDP DSYTYTSLIH GECIADNVDE ALRLFREMGS KGLDQSSVTY TVMISGLSKA GKSDEAFGFY DEMKRKGFTI
601: DNKVYTALVG SLHSPET
101: AAIALSHRLY TDRRFREMKS LLNSISTDGA EIIGSVYVYE GKVEFLETLF DLMIRVYVDK GMFQEGLKVF DYMVEKGMKI DERSCIVFLV AAKKRLEIDL
201: CLEIFKRMVD CGVRITVYSL TIVVEGLCRR GEVEKSRKLV REFNRKGIKP EAYTYNTIIN AYVKVRDFSG VEEVLKEMRK GGVGYNKVTY TLLMELSVKN
301: GRMGDAEKLF DEMRERGVEL DVYLYTSMIS LYCRKGNVKR AFLLFDELVE KGLSPSSHTY GALIDGVCKV GEMGAAEILM NEMQSRGVDI TQVVFNTLIN
401: GYCRKRMIDE ALMIYDVMEK KGFEADVFTF NTIASCLNRL KRYDEAKEWI FRMMEGGVRL NTVSYTNLID VYCKEGNIEE AKRLFVEMSS KGSQPNAITY
501: NVKIDACCKQ GKVKEARKLR ADMEAKGMDP DSYTYTSLIH GECIADNVDE ALRLFREMGS KGLDQSSVTY TVMISGLSKA GKSDEAFGFY DEMKRKGFTI
601: DNKVYTALVG SLHSPET
001: MNMSSSSRKL SRLFNIVTQN QKSPVLLSSD QEAARRITAC LVEKSTIGKL QSNPSLLFNL NSNVTRLVLS EPTLPTQSCI DFFKLLREFE SNLKPDLTAV
101: VTLSHRLYSN RRFNEMRSLL NSVVNDGFYK RPVEELGSAM VDCDISEEKF EFFEKFFDLV FRVYVDNGMF EEGLRVFDYM VKKGLSIDER SCIVFLVAAK
201: KRRRIDLCLE IFRRMVDSGV KITVYSLTIV VEGLCRRGEV EKSKKLIKEF SVKGIKPEAY TYNTIINAYV KQRDFSGVEG VLKVMKKDGV VYNKVTYTLL
301: MELSVKNGKM SDAEKLFDEM RERGIESDVH VYTSLISWNC RKGNMKRAFL LFDELTEKGL SPSSYTYGAL IDGVCKVGEM GAAEILMNEM QSKGVNITQV
401: VFNTLIDGYC RKGMVDEASM IYDVMEQKGF QADVFTCNTI ASCFNRLKRY DEAKQWLFRM MEGGVKLSTV SYTNLIDVYC KEGNVEEAKR LFVEMSSKGV
501: QPNAITYNVM IYAYCKQGKI KEARKLRANM EANGMDPDSY TYTSLIHGEC IADNVDEAMR LFSEMGLKGL DQNSVTYTVM ISGLSKAGKS DEAFGLYDEM
601: KRKGYTIDNK VYTALIGSMH SPET
101: VTLSHRLYSN RRFNEMRSLL NSVVNDGFYK RPVEELGSAM VDCDISEEKF EFFEKFFDLV FRVYVDNGMF EEGLRVFDYM VKKGLSIDER SCIVFLVAAK
201: KRRRIDLCLE IFRRMVDSGV KITVYSLTIV VEGLCRRGEV EKSKKLIKEF SVKGIKPEAY TYNTIINAYV KQRDFSGVEG VLKVMKKDGV VYNKVTYTLL
301: MELSVKNGKM SDAEKLFDEM RERGIESDVH VYTSLISWNC RKGNMKRAFL LFDELTEKGL SPSSYTYGAL IDGVCKVGEM GAAEILMNEM QSKGVNITQV
401: VFNTLIDGYC RKGMVDEASM IYDVMEQKGF QADVFTCNTI ASCFNRLKRY DEAKQWLFRM MEGGVKLSTV SYTNLIDVYC KEGNVEEAKR LFVEMSSKGV
501: QPNAITYNVM IYAYCKQGKI KEARKLRANM EANGMDPDSY TYTSLIHGEC IADNVDEAMR LFSEMGLKGL DQNSVTYTVM ISGLSKAGKS DEAFGLYDEM
601: KRKGYTIDNK VYTALIGSMH SPET
Arabidopsis Description
Pentatricopeptide repeat-containing protein At2g32630 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8P6]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.