CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74435	Canola	mitochondrion	96.58	94.63
AT5G39710.1	Thale cress	mitochondrion	88.36	86.35
VIT_03s0063g00930.t01	Wine grape	cytosol, plastid	65.34	62.6
KRG89236	Soybean	plastid	60.0	56.3
Solyc01g108410.1.1	Tomato	mitochondrion	58.77	55.93
PGSC0003DMT400066369	Potato	mitochondrion	58.49	55.67
OQU75844	Sorghum	cytosol	36.85	48.82
KRH49758	Soybean	plastid	45.75	47.44
GSMUA_Achr3P04340_001	Banana	cytosol	42.74	47.42
Zm00001d010121_P001	Maize	plastid	41.37	43.7
Zm00001d045319_P001	Maize	plastid	41.1	43.42
Os06t0152500-00	Rice	plastid	40.96	43.08
TraesCS7A01G109000.1	Wheat	plastid	40.82	42.88
TraesCS7D01G103900.1	Wheat	plastid	40.68	42.73
TraesCS7B01G006900.1	Wheat	plastid	40.41	42.45
HORVU7Hr1G023200.23	Barley	cytosol	40.0	42.07
CDY10136	Canola	cytosol	15.89	31.69
CDY17611	Canola	cytosol	23.97	29.51
CDY51888	Canola	cytosol, mitochondrion, plastid	19.59	28.95
CDX78962	Canola	cytosol	19.59	28.89
CDY47261	Canola	plastid	28.36	28.4
CDY21405	Canola	cytosol	16.03	27.66
CDX71231	Canola	mitochondrion	23.7	27.42
CDY36644	Canola	mitochondrion	23.7	27.33
CDX86757	Canola	endoplasmic reticulum, extracellular	21.37	27.13
CDY04754	Canola	cytosol	8.9	26.86
CDY04764	Canola	cytosol	13.01	26.84
CDX94941	Canola	cytosol, plastid	22.6	26.83
CDX93473	Canola	mitochondrion	22.47	26.8
CDY67116	Canola	cytosol	21.64	26.64
CDX74507	Canola	cytosol	21.64	26.64
CDY57780	Canola	endoplasmic reticulum	20.82	26.43
CDY17453	Canola	mitochondrion	16.44	26.14
CDX93490	Canola	mitochondrion	21.37	26.0
CDY03072	Canola	mitochondrion	25.89	25.68
CDX79463	Canola	plastid	21.51	25.45
CDX87212	Canola	plastid	22.33	25.43
CDX84733	Canola	plastid	21.37	25.41
CDY04100	Canola	plastid	15.89	25.27
CDX94959	Canola	mitochondrion	20.96	25.16
CDY49798	Canola	mitochondrion	22.33	25.12
CDY31404	Canola	cytosol	25.07	24.7
CDY11211	Canola	mitochondrion	24.93	24.56
CDX71311	Canola	cytosol	23.29	24.32
CDX94298	Canola	mitochondrion	18.9	24.25
CDY50117	Canola	plastid	20.14	23.6
CDY42586	Canola	plastid	20.0	23.55
CDY04753	Canola	mitochondrion, plastid	13.15	23.08
CDX80791	Canola	mitochondrion	17.81	21.63
CDX82665	Canola	mitochondrion, plastid	20.41	21.5
CDX94295	Canola	cytosol	5.21	21.47
CDY39141	Canola	mitochondrion	20.14	21.24
CDX89313	Canola	mitochondrion	20.68	11.16

Protein Annotations

EnsemblPlants:CDY30265	EnsemblPlantsGene:GSBRNA2T00044906001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF280
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY30265	ProteinID:CDY30265.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0004EE6067	UniProt:A0A078GUT6	MapMan:35.1	:	:

Description

BnaC04g31760DBnaC04g31760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GUT6]

Coordinates

chrLK032251:+:163977..166786

Molecular Weight (calculated)

81875.6 Da

IEP (calculated)

7.594

GRAVY (calculated)

-0.078

Length

730 amino acids

Sequence
(BLAST)

001: MIISKTLIRR SLSSLASPPS NSLLVDKALT FLRRHPYQLQ HISAHFTPEA ASSLLLKSQN DQELILKFLN WANPHDFFTL RCKCITLHIL TKFKLYKTAQ
101: TLAEDVAAKT QDASLVFCSL QETYASCDST SSVFDLVVKS YSRLNLIEKA LSIIHLAKAH GFMPGVLSYN AVLDATIRTK RDISFAENVF KEMLETQVSP
201: NVFTYNILIR GFCSAGNLDA ALQFFDKMEK KGCLPNVVTY NTLIDGYCKL RRIDDGFELL RAMALKGLEP NLISYNVVIN GLCREGRMKE TSLVLTEMNR
301: RGFSLDEVTY NTLIKGYCKE GNFHQALVMH AEMLRHGLSP SVITYTSLIH SMCKAGNMNR AVEFLDQMRV RGLCPNERTY TTLVDGFSQK GCMNEAYRVL
401: KEMVDNGFRP SIVTYNALIN GHCVAGKMED ARAVLEDMKE KGLAPDVVSY STVLSGFCRS YDVDEAVRVK KEMVEKGIQP DTITYSSLIQ GFCEQRRTKE
501: ACDLFGEMLR VGLTPDEFTY TALINAHCAE GGLEKALNLH NEMVAKGLLP DVVTYSVLIN GLNKQTRTRE AKRLLLKLFY DESVPSDVTV VSLIKGFCMK
601: GMMNEADRVF DSMIEKNHKP DGTAYNVMIH GHCRGGDVRK AYRLYKEMVS CGFLVHTVTV IALVKALHKE GMVDELSSII DNVLRSCELS EAEQAKVLVE
701: INHREGNMDV VLDVLAEMAK DGFLPNTRSQ

Best Arabidopsis Sequence Match ( AT5G39710.1 )
(BLAST)

001: MFLTKTLIRR SLSTFASSPS DSLLADKALT FLKRHPYQLH HLSANFTPEA ASNLLLKSQN DQALILKFLN WANPHQFFTL RCKCITLHIL TKFKLYKTAQ
101: ILAEDVAAKT LDDEYASLVF KSLQETYDLC YSTSSVFDLV VKSYSRLSLI DKALSIVHLA QAHGFMPGVL SYNAVLDATI RSKRNISFAE NVFKEMLESQ
201: VSPNVFTYNI LIRGFCFAGN IDVALTLFDK METKGCLPNV VTYNTLIDGY CKLRKIDDGF KLLRSMALKG LEPNLISYNV VINGLCREGR MKEVSFVLTE
301: MNRRGYSLDE VTYNTLIKGY CKEGNFHQAL VMHAEMLRHG LTPSVITYTS LIHSMCKAGN MNRAMEFLDQ MRVRGLCPNE RTYTTLVDGF SQKGYMNEAY
401: RVLREMNDNG FSPSVVTYNA LINGHCVTGK MEDAIAVLED MKEKGLSPDV VSYSTVLSGF CRSYDVDEAL RVKREMVEKG IKPDTITYSS LIQGFCEQRR
501: TKEACDLYEE MLRVGLPPDE FTYTALINAY CMEGDLEKAL QLHNEMVEKG VLPDVVTYSV LINGLNKQSR TREAKRLLLK LFYEESVPSD VTYHTLIENC
601: SNIEFKSVVS LIKGFCMKGM MTEADQVFES MLGKNHKPDG TAYNIMIHGH CRAGDIRKAY TLYKEMVKSG FLLHTVTVIA LVKALHKEGK VNELNSVIVH
701: VLRSCELSEA EQAKVLVEIN HREGNMDVVL DVLAEMAKDG FLPNGIS

Arabidopsis Description

EMB2745Pentatricopeptide repeat-containing protein At5g39710 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIX3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.