CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005695.1-P	Field mustard	mitochondrion	99.46	99.46
CDX80791	Canola	mitochondrion	66.8	82.36
AT5G01110.2	Thale cress	cytosol, plastid	83.27	81.51
VIT_06s0009g03510.t01	Wine grape	mitochondrion	49.12	59.77
KRH14574	Soybean	plastid	50.34	58.28
PGSC0003DMT400024895	Potato	cytosol	34.28	55.46
GSMUA_AchrUn_...	Banana	mitochondrion	40.76	52.52
PGSC0003DMT400003372	Potato	mitochondrion	51.15	51.92
KXG40115	Sorghum	cytosol	28.21	48.38
TraesCS4A01G023000.1	Wheat	plastid	37.25	47.02
TraesCS4B01G280500.1	Wheat	plastid	37.11	46.85
TraesCS4D01G279000.1	Wheat	mitochondrion	39.68	45.3
Zm00001d027800_P001	Maize	mitochondrion	39.54	45.15
HORVU4Hr1G074200.9	Barley	mitochondrion	39.54	42.96
Os03t0165100-00	Rice	cytosol, mitochondrion	39.27	39.97
CDY10136	Canola	cytosol	15.38	31.15
CDY36644	Canola	mitochondrion	24.97	29.23
CDX71231	Canola	mitochondrion	24.7	29.0
CDY47261	Canola	plastid	27.67	28.12
CDX94941	Canola	cytosol, plastid	22.27	26.83
CDX93473	Canola	mitochondrion	22.13	26.8
CDX93490	Canola	mitochondrion	21.32	26.33
CDY57780	Canola	endoplasmic reticulum	20.24	26.09
CDY49798	Canola	mitochondrion	22.81	26.04
CDY21405	Canola	cytosol	14.71	25.77
CDX86757	Canola	endoplasmic reticulum, extracellular	19.97	25.74
CDX94959	Canola	mitochondrion	21.05	25.66
CDY17611	Canola	cytosol	20.51	25.63
CDY30265	Canola	mitochondrion	24.56	24.93
CDX74507	Canola	cytosol	19.84	24.79
CDY67116	Canola	cytosol	19.7	24.62
CDY03072	Canola	mitochondrion	24.43	24.59
CDX74435	Canola	mitochondrion	24.56	24.43
CDY04764	Canola	cytosol	11.61	24.29
CDX84733	Canola	plastid	20.11	24.27
CDX79463	Canola	plastid	19.97	23.99
CDX87212	Canola	plastid	20.65	23.87
CDY04753	Canola	mitochondrion, plastid	13.36	23.8
CDY50117	Canola	plastid	19.97	23.76
CDY51888	Canola	cytosol, mitochondrion, plastid	15.79	23.68
CDY04754	Canola	cytosol	7.69	23.55
CDY04100	Canola	plastid	14.57	23.53
CDX78962	Canola	cytosol	15.52	23.23
CDY17453	Canola	mitochondrion	14.3	23.09
CDY42586	Canola	plastid	19.16	22.9
CDY31404	Canola	cytosol	22.81	22.81
CDX94298	Canola	mitochondrion	16.6	21.62
CDX71311	Canola	cytosol	20.38	21.6
CDX82665	Canola	mitochondrion, plastid	19.03	20.35
CDX94295	Canola	cytosol	4.86	20.34
CDY39141	Canola	mitochondrion	18.76	20.09
CDX89313	Canola	mitochondrion	20.38	11.16

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078FCZ0	EnsemblPlants:CDY11211	ProteinID:CDY11211	ProteinID:CDY11211.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00049229001	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF770
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EE4CB6	SEG:seg

Description

BnaA03g00470DBnaA03g00470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FCZ0]

Coordinates

chrLK032010:+:166461..168686

Molecular Weight (calculated)

83039.4 Da

IEP (calculated)

7.918

GRAVY (calculated)

-0.142

Length

741 amino acids

Sequence
(BLAST)

001: MAAHRLLPSR ILLFSRVKTP HTRLKPHKAL TTSSLAPAPA PESETPSSSC SDSDPYLVDK LCFSLTQGNN NNNNNTAASL RNHLTRLNPL SVVEVLYRCR
101: NDLTLAQRFI YQLGSHLPNF KHTSFSLSAM IHILVRSGRL SDAQSCLLRM VRRSGVSREE VVSSLASTYT NCASNDSVFD LLIRTYVQAR KLREAHEAFT
201: LLRSKGYTVS IDACNALIGS LVRLGWVELA WGVYHDISRS GINVYTLNIM VNALCKDGQI DKVGDFLSQV QEKMGVYPDI VTYNTLISAY SSKGFIEEAF
301: ELMNAMPSKG FSPGVYTYNT VINGLCKHRK YERAKEVFAE MLESGLSPDA TTYRSLLMEA CKKGDAVEVE EIFSDMRCRD VVPDLVCFSS VMSLFARSGD
401: LDKALVYFNF LKGAGLVPDN VIYTVLIQGY CKKGMLSEAM DLRNEMLRRG CCMDVVAYNT ILHGLCKRKM LGDADKLFRE MTERGLFPDS YTLTILIDGH
501: CKLGNLQNAM ELFKKMKEKR IRLDVVTYNT LLDGFGKVGD IDTAKEIWTD MVSREILPTP VSYSIMVNAL CSKGHLSGAF RVWDEMMSKG VKPTVMICNS
601: MIKGYCRSGN ASDGESFLDK MVSEGFVPDI ITYNTLIYGY VREENMSRAF GLVKKMEGEK QGGGLVPDVF TYNSILHGFC RQNQMKEAEA VLRKMIERGV
701: DPDKSTYTAL INGFVSQDNL TEAFRFHDEM LQRGFSPDDQ F

Best Arabidopsis Sequence Match ( AT5G01110.2 )
(BLAST)

001: MNQTTVKVFK FQFLFSIEIK LSLSQPQKMI VHRIIPSRVK DPLTRFKPLK NLTTSSSPVF EPSSSSSSSS SSASFSVSDS FLVEKICFSL KQGNNNVRNH
101: LIRLNPLAVV EVLYRCRNDL TLGQRFVDQL GFHFPNFKHT SLSLSAMIHI LVRSGRLSDA QSCLLRMIRR SGVSRLEIVN SLDSTFSNCG SNDSVFDLLI
201: RTYVQARKLR EAHEAFTLLR SKGFTVSIDA CNALIGSLVR IGWVELAWGV YQEISRSGVG INVYTLNIMV NALCKDGKME KVGTFLSQVQ EKGVYPDIVT
301: YNTLISAYSS KGLMEEAFEL MNAMPGKGFS PGVYTYNTVI NGLCKHGKYE RAKEVFAEML RSGLSPDSTT YRSLLMEACK KGDVVETEKV FSDMRSRDVV
401: PDLVCFSSMM SLFTRSGNLD KALMYFNSVK EAGLIPDNVI YTILIQGYCR KGMISVAMNL RNEMLQQGCA MDVVTYNTIL HGLCKRKMLG EADKLFNEMT
501: ERALFPDSYT LTILIDGHCK LGNLQNAMEL FQKMKEKRIR LDVVTYNTLL DGFGKVGDID TAKEIWADMV SKEILPTPIS YSILVNALCS KGHLAEAFRV
601: WDEMISKNIK PTVMICNSMI KGYCRSGNAS DGESFLEKMI SEGFVPDCIS YNTLIYGFVR EENMSKAFGL VKKMEEEQGG LVPDVFTYNS ILHGFCRQNQ
701: MKEAEVVLRK MIERGVNPDR STYTCMINGF VSQDNLTEAF RIHDEMLQRG FSPDDKF

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT5G01110]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.