CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038853.1-P	Field mustard	mitochondrion	95.38	94.97
CDY39141	Canola	mitochondrion	94.37	94.51
AT2G19280.1	Thale cress	mitochondrion	76.91	76.91
GSMUA_Achr1P01200_001	Banana	cytosol, mitochondrion	38.82	37.99
CDX71231	Canola	mitochondrion	23.38	25.67
CDY36644	Canola	mitochondrion	23.09	25.28
CDY57780	Canola	endoplasmic reticulum	20.35	24.52
CDX86757	Canola	endoplasmic reticulum, extracellular	20.06	24.17
CDX93490	Canola	mitochondrion	19.91	23.0
CDX74507	Canola	cytosol	19.62	22.93
CDY67116	Canola	cytosol	19.62	22.93
CDY51888	Canola	cytosol, mitochondrion, plastid	15.87	22.27
CDX94959	Canola	mitochondrion	19.48	22.2
CDX94295	Canola	cytosol	5.63	22.03
CDY47261	Canola	plastid	23.09	21.95
CDX78962	Canola	cytosol	15.44	21.62
CDY03072	Canola	mitochondrion	22.94	21.6
CDY17611	Canola	cytosol	18.18	21.25
CDY50117	Canola	plastid	19.05	21.19
CDY10136	Canola	cytosol	11.11	21.04
CDX93473	Canola	mitochondrion	18.33	20.75
CDX94941	Canola	cytosol, plastid	18.33	20.65
CDY42586	Canola	plastid	18.47	20.65
CDY30265	Canola	mitochondrion	21.5	20.41
CDX79463	Canola	plastid	17.89	20.1
CDX84733	Canola	plastid	17.75	20.03
CDX74435	Canola	mitochondrion	21.5	20.0
CDY04753	Canola	mitochondrion, plastid	11.83	19.71
CDX87212	Canola	plastid	18.04	19.5
CDY17453	Canola	mitochondrion	12.84	19.39
CDY04100	Canola	plastid	12.84	19.39
CDY11211	Canola	mitochondrion	20.35	19.03
CDY31404	Canola	cytosol	19.91	18.62
CDY21405	Canola	cytosol	11.26	18.44
CDY04764	Canola	cytosol	9.24	18.08
CDX94298	Canola	mitochondrion	14.72	17.93
CDY49798	Canola	mitochondrion	16.45	17.57
CDX71311	Canola	cytosol	17.32	17.17
CDX80791	Canola	mitochondrion	14.29	16.47
CDY04754	Canola	cytosol	4.76	13.64
CDX89313	Canola	mitochondrion	14.86	7.61

Protein Annotations

EnsemblPlants:CDX82665	EnsemblPlantsGene:GSBRNA2T00137911001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF325
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDX82665	ProteinID:CDX82665.1
TIGRFAMs:TIGR00756	UniParc:UPI0004EE8CAD	MapMan:35.1	:	:	:

Description

BnaC07g02010D

Coordinates

chrLK031829:+:1049951..1052032

Molecular Weight (calculated)

77714.6 Da

IEP (calculated)

7.484

GRAVY (calculated)

0.099

Length

693 amino acids

Sequence
(BLAST)

001: MWVSSSIIKS SGFARTKAFR YIWSTTFLFH PLADYNNPRL LRSGSGNTTH FASRHYASNT GVRSSKPFGE DFDTTLKHIE VSDTSVETIR NVLIKHRWIN
101: RFDSEFSIEL DEYKVIRILD DLFAETSDAS IALYFFKWSE LWIGAKHSSR SICRMAHILV SGNMNYRAVD MLLHLVKRSD GEERSLCLAM NDLFETRGDR
201: EVLETVFSML VDCCVKGRKV DMAVKLAYKM DQLGIFPSRG VCISLLKEIL RIQGLELARE FVEHMISRGR HLNAAVLTLF VSKHCSDGCF DKAWELLMEM
301: KQQYGIRPDI VAFTVFIHRL CKAGFLKEAT SVLFNLKLFG ISQDSVSVSC VIDGFCKAGK PEEAVKLIHY FRLRPNIFVY SSFLSKICTE GDMLKASTVF
401: QEIFELGLLA DCVCYTTMIG GYCKLGKIDE AFKCFGAMLK SGNSPSLTTY TLLIGACSKI GNVDDAEALF RNMKVEGLVP DVVTYNNLMH GYGKTHQLNK
501: VFELMDGMRS AGVFPDVATY NILIHSMVVR GYVDEANGIV NELIRRGFVP SVLAFTDVIG GFSKKGDFQE AFLLWHYMAD LRVQPDVVTC SALLHGYCRA
601: QRMGDAMVLF NKLLDAGLKP DVVLYNTLIH GYCSVGETEK ACELIGMMVQ RGMVPNESTY VALVVGLEGK SGVNSEKHAS MLLEEIFVAN SAK

Best Arabidopsis Sequence Match ( AT2G19280.4 )
(BLAST)

001: MWVSIFNLKS SGLNHFCTRT KAFRYFWCRT FSLASLSENN SRFQTDSSRL PYSGSRYYHS SSKHFGEDFV SILKNIDVPR DCVETIRNVL VKHNWIQKYE
101: SGFSTELDQY TVIRILDDLF EETLDASIVL YFFRWSELWI GVEHSSRSIS RMIHILVSGN MNYRAVDMLL CLVKKCSGEE RSLCLVMKDL FETRIDRRVL
201: ETVFSILIDC CIRERKVNMA LKLTYKVDQF GIFPSRGVCI SLLKEILRVH GLELAREFVE HMLSRGRHLN AAVLSLFIRK YCSDGYFDKG WELLMGMKHY
301: GIRPDIVAFT VFIDKLCKAG FLKEATSVLF KLKLFGISQD SVSVSSVIDG FCKVGKPEEA IKLIHSFRLR PNIFVYSSFL SNICSTGDML RASTIFQEIF
401: ELGLLPDCVC YTTMIDGYCN LGRTDKAFQY FGALLKSGNP PSLTTSTILI GACSRFGSIS DAESVFRNMK TEGLKLDVVT YNNLMHGYGK THQLNKVFEL
501: IDEMRSAGIS PDVATYNILI HSMVVRGYID EANEIISELI RRGFVPSTLA FTDVIGGFSK RGDFQEAFIL WFYMADLRMK PDVVTCSALL HGYCKAQRME
601: KAIVLFNKLL DAGLKPDVVL YNTLIHGYCS VGDIEKACEL IGLMVQRGML PNESTHHALV LGLEGKRFVN SETHASMLLE EIIVAKWHLT SGG

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g19280 [Source:UniProtKB/Swiss-Prot;Acc:Q6NKW7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.